Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04995 and MMP_RS05000 are separated by 49 nucleotides MMP_RS05000 and MMP_RS05005 are separated by 86 nucleotides MMP_RS05005 and MMP_RS05010 are separated by 256 nucleotides MMP_RS05010 and MMP_RS05015 are separated by 18 nucleotides
MMP_RS04995: MMP_RS04995 - hypothetical protein, at 952,202 to 952,459
_RS04995
MMP_RS05000: MMP_RS05000 - FmdE family protein, at 952,509 to 953,087
_RS05000
MMP_RS05005: MMP_RS05005 - uroporphyrinogen-III C-methyltransferase, at 953,174 to 953,893
_RS05005
MMP_RS05010: MMP_RS05010 - KEOPS complex subunit Cgi121, at 954,150 to 954,581
_RS05010
MMP_RS05015: MMP_RS05015 - histidinol dehydrogenase, at 954,600 to 955,874
_RS05015
Position (kb) 953
954 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 952.176 kb on + strand at 952.176 kb on + strand at 952.180 kb on + strand at 952.199 kb on + strand at 952.318 kb on - strand, within MMP_RS04995 at 952.319 kb on + strand, within MMP_RS04995 at 952.375 kb on - strand, within MMP_RS04995 at 952.387 kb on + strand, within MMP_RS04995 at 952.392 kb on + strand, within MMP_RS04995 at 952.392 kb on + strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.430 kb on - strand, within MMP_RS04995 at 952.436 kb on - strand at 952.436 kb on - strand at 952.456 kb on + strand at 952.487 kb on - strand at 952.501 kb on - strand at 952.510 kb on - strand at 952.546 kb on + strand at 952.559 kb on - strand at 952.560 kb on + strand at 952.580 kb on - strand, within MMP_RS05000 at 952.659 kb on - strand, within MMP_RS05000 at 952.659 kb on - strand, within MMP_RS05000 at 952.704 kb on + strand, within MMP_RS05000 at 952.855 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.938 kb on + strand, within MMP_RS05000 at 952.938 kb on + strand, within MMP_RS05000 at 952.947 kb on + strand, within MMP_RS05000 at 952.957 kb on + strand, within MMP_RS05000 at 953.005 kb on - strand, within MMP_RS05000 at 953.005 kb on - strand, within MMP_RS05000 at 953.006 kb on + strand, within MMP_RS05000 at 953.031 kb on + strand at 953.109 kb on - strand at 953.121 kb on - strand at 953.121 kb on - strand at 953.121 kb on - strand at 953.142 kb on - strand at 953.143 kb on + strand at 953.160 kb on + strand at 953.175 kb on - strand at 953.175 kb on - strand at 953.186 kb on - strand at 953.186 kb on - strand at 953.187 kb on + strand at 953.187 kb on + strand at 953.206 kb on - strand at 953.393 kb on - strand at 953.393 kb on - strand at 953.574 kb on + strand at 953.588 kb on - strand at 953.924 kb on - strand at 953.925 kb on + strand at 953.925 kb on + strand at 953.934 kb on - strand at 953.934 kb on - strand at 953.935 kb on + strand at 953.963 kb on + strand at 953.967 kb on + strand at 953.968 kb on - strand at 953.969 kb on + strand at 953.988 kb on - strand at 953.988 kb on - strand at 953.989 kb on + strand at 954.022 kb on + strand at 954.046 kb on + strand at 954.049 kb on - strand at 954.050 kb on + strand at 954.050 kb on + strand at 954.052 kb on + strand at 954.061 kb on - strand at 954.069 kb on - strand at 954.069 kb on - strand at 954.071 kb on - strand at 954.074 kb on - strand at 954.080 kb on + strand at 954.138 kb on + strand at 954.157 kb on - strand at 954.268 kb on - strand at 954.269 kb on + strand at 954.271 kb on + strand at 954.294 kb on + strand at 954.322 kb on - strand at 954.650 kb on + strand at 954.791 kb on + strand at 954.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 952,176 + -1.2 952,176 + -0.1 952,180 + -1.0 952,199 + +0.6 952,318 - MMP_RS04995 0.45 +0.5 952,319 + MMP_RS04995 0.45 +0.4 952,375 - MMP_RS04995 0.67 +0.1 952,387 + MMP_RS04995 0.72 -2.3 952,392 + MMP_RS04995 0.74 -1.5 952,392 + MMP_RS04995 0.74 +1.4 952,393 - MMP_RS04995 0.74 +1.8 952,393 - MMP_RS04995 0.74 +0.2 952,393 - MMP_RS04995 0.74 -1.1 952,394 + MMP_RS04995 0.74 +0.9 952,394 + MMP_RS04995 0.74 +1.8 952,394 + MMP_RS04995 0.74 +1.3 952,394 + MMP_RS04995 0.74 +1.2 952,394 + MMP_RS04995 0.74 -0.2 952,394 + MMP_RS04995 0.74 +2.6 952,394 + MMP_RS04995 0.74 +2.5 952,430 - MMP_RS04995 0.88 +0.7 952,436 - -0.9 952,436 - +1.1 952,456 + +1.1 952,487 - +0.6 952,501 - +4.0 952,510 - +0.8 952,546 + +1.3 952,559 - -0.9 952,560 + +1.3 952,580 - MMP_RS05000 0.12 -1.2 952,659 - MMP_RS05000 0.26 +1.5 952,659 - MMP_RS05000 0.26 -0.1 952,704 + MMP_RS05000 0.34 -1.8 952,855 - MMP_RS05000 0.60 -0.1 952,934 - MMP_RS05000 0.73 +3.3 952,934 - MMP_RS05000 0.73 +1.3 952,934 - MMP_RS05000 0.73 +0.3 952,938 + MMP_RS05000 0.74 +4.6 952,938 + MMP_RS05000 0.74 +0.3 952,947 + MMP_RS05000 0.76 -1.1 952,957 + MMP_RS05000 0.77 -1.0 953,005 - MMP_RS05000 0.86 +0.8 953,005 - MMP_RS05000 0.86 +2.9 953,006 + MMP_RS05000 0.86 +0.6 953,031 + +0.1 953,109 - +0.6 953,121 - -1.0 953,121 - -0.5 953,121 - -1.0 953,142 - -0.1 953,143 + +0.6 953,160 + -1.2 953,175 - +1.7 953,175 - -1.0 953,186 - -0.1 953,186 - -1.7 953,187 + +1.1 953,187 + -1.0 953,206 - -1.4 953,393 - -0.5 953,393 - -2.0 953,574 + -2.6 953,588 - -0.8 953,924 - -1.0 953,925 + -3.0 953,925 + -2.3 953,934 - +0.2 953,934 - -1.0 953,935 + -1.9 953,963 + -0.7 953,967 + +1.0 953,968 - +0.6 953,969 + +1.5 953,988 - -0.3 953,988 - +0.6 953,989 + +2.7 954,022 + +1.9 954,046 + +1.7 954,049 - -1.4 954,050 + -1.9 954,050 + +0.9 954,052 + -1.9 954,061 - -1.3 954,069 - -3.4 954,069 - -3.1 954,071 - -3.4 954,074 - -2.9 954,080 + +1.3 954,138 + -3.5 954,157 - -1.4 954,268 - -0.8 954,269 + -1.1 954,271 + -2.8 954,294 + -3.9 954,322 - -0.6 954,650 + -0.5 954,791 + -3.5 954,839 + -2.0
Or see this region's nucleotide sequence