Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04985 and MMP_RS04990 overlap by 4 nucleotides MMP_RS04990 and MMP_RS04995 are separated by 124 nucleotides MMP_RS04995 and MMP_RS05000 are separated by 49 nucleotides MMP_RS05000 and MMP_RS05005 are separated by 86 nucleotides
MMP_RS04985: MMP_RS04985 - DUF2180 family protein, at 951,146 to 951,361
_RS04985
MMP_RS04990: MMP_RS04990 - aquaporin family protein, at 951,358 to 952,077
_RS04990
MMP_RS04995: MMP_RS04995 - hypothetical protein, at 952,202 to 952,459
_RS04995
MMP_RS05000: MMP_RS05000 - FmdE family protein, at 952,509 to 953,087
_RS05000
MMP_RS05005: MMP_RS05005 - uroporphyrinogen-III C-methyltransferase, at 953,174 to 953,893
_RS05005
Position (kb) 952
953 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 951.238 kb on + strand, within MMP_RS04985 at 951.238 kb on + strand, within MMP_RS04985 at 951.240 kb on - strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.335 kb on + strand, within MMP_RS04985 at 951.565 kb on + strand, within MMP_RS04990 at 951.565 kb on + strand, within MMP_RS04990 at 951.636 kb on - strand, within MMP_RS04990 at 951.644 kb on - strand, within MMP_RS04990 at 951.647 kb on + strand, within MMP_RS04990 at 951.648 kb on - strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.762 kb on + strand, within MMP_RS04990 at 951.973 kb on + strand, within MMP_RS04990 at 951.995 kb on + strand, within MMP_RS04990 at 951.998 kb on + strand, within MMP_RS04990 at 952.007 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.011 kb on - strand at 952.011 kb on - strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.038 kb on + strand at 952.038 kb on + strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.075 kb on - strand at 952.075 kb on - strand at 952.128 kb on + strand at 952.176 kb on + strand at 952.176 kb on + strand at 952.180 kb on + strand at 952.199 kb on + strand at 952.318 kb on - strand, within MMP_RS04995 at 952.319 kb on + strand, within MMP_RS04995 at 952.375 kb on - strand, within MMP_RS04995 at 952.387 kb on + strand, within MMP_RS04995 at 952.392 kb on + strand, within MMP_RS04995 at 952.392 kb on + strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.393 kb on - strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.394 kb on + strand, within MMP_RS04995 at 952.430 kb on - strand, within MMP_RS04995 at 952.436 kb on - strand at 952.436 kb on - strand at 952.456 kb on + strand at 952.487 kb on - strand at 952.501 kb on - strand at 952.510 kb on - strand at 952.546 kb on + strand at 952.559 kb on - strand at 952.560 kb on + strand at 952.580 kb on - strand, within MMP_RS05000 at 952.659 kb on - strand, within MMP_RS05000 at 952.659 kb on - strand, within MMP_RS05000 at 952.704 kb on + strand, within MMP_RS05000 at 952.855 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.934 kb on - strand, within MMP_RS05000 at 952.938 kb on + strand, within MMP_RS05000 at 952.938 kb on + strand, within MMP_RS05000 at 952.947 kb on + strand, within MMP_RS05000 at 952.957 kb on + strand, within MMP_RS05000 at 953.005 kb on - strand, within MMP_RS05000 at 953.005 kb on - strand, within MMP_RS05000 at 953.006 kb on + strand, within MMP_RS05000 at 953.031 kb on + strand at 953.109 kb on - strand at 953.121 kb on - strand at 953.121 kb on - strand at 953.121 kb on - strand at 953.142 kb on - strand at 953.143 kb on + strand at 953.160 kb on + strand at 953.175 kb on - strand at 953.175 kb on - strand at 953.186 kb on - strand at 953.186 kb on - strand at 953.187 kb on + strand at 953.187 kb on + strand at 953.206 kb on - strand at 953.393 kb on - strand at 953.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 951,238 + MMP_RS04985 0.43 -2.0 951,238 + MMP_RS04985 0.43 +1.2 951,240 - MMP_RS04985 0.44 +0.3 951,241 + MMP_RS04985 0.44 +0.9 951,241 + MMP_RS04985 0.44 +0.2 951,335 + MMP_RS04985 0.88 -0.9 951,565 + MMP_RS04990 0.29 +1.0 951,565 + MMP_RS04990 0.29 +0.5 951,636 - MMP_RS04990 0.39 -1.6 951,644 - MMP_RS04990 0.40 -0.3 951,647 + MMP_RS04990 0.40 +0.7 951,648 - MMP_RS04990 0.40 +0.8 951,649 + MMP_RS04990 0.40 -0.3 951,649 + MMP_RS04990 0.40 +0.3 951,762 + MMP_RS04990 0.56 +0.6 951,973 + MMP_RS04990 0.85 -1.7 951,995 + MMP_RS04990 0.88 -0.8 951,998 + MMP_RS04990 0.89 -0.6 952,007 - +2.0 952,009 - -0.6 952,009 - -1.1 952,009 - +0.1 952,009 - +0.5 952,010 + -1.7 952,010 + -0.4 952,010 + -0.2 952,011 - -0.4 952,011 - -0.3 952,012 + +1.4 952,012 + +1.3 952,012 + -1.1 952,012 + +0.3 952,037 - -0.8 952,037 - +0.4 952,037 - -0.4 952,037 - -2.2 952,038 + +3.6 952,038 + +1.2 952,054 - -0.8 952,054 - -0.8 952,054 - +2.3 952,075 - +0.2 952,075 - -0.5 952,128 + +2.3 952,176 + -1.2 952,176 + -0.1 952,180 + -1.0 952,199 + +0.6 952,318 - MMP_RS04995 0.45 +0.5 952,319 + MMP_RS04995 0.45 +0.4 952,375 - MMP_RS04995 0.67 +0.1 952,387 + MMP_RS04995 0.72 -2.3 952,392 + MMP_RS04995 0.74 -1.5 952,392 + MMP_RS04995 0.74 +1.4 952,393 - MMP_RS04995 0.74 +1.8 952,393 - MMP_RS04995 0.74 +0.2 952,393 - MMP_RS04995 0.74 -1.1 952,394 + MMP_RS04995 0.74 +0.9 952,394 + MMP_RS04995 0.74 +1.8 952,394 + MMP_RS04995 0.74 +1.3 952,394 + MMP_RS04995 0.74 +1.2 952,394 + MMP_RS04995 0.74 -0.2 952,394 + MMP_RS04995 0.74 +2.6 952,394 + MMP_RS04995 0.74 +2.5 952,430 - MMP_RS04995 0.88 +0.7 952,436 - -0.9 952,436 - +1.1 952,456 + +1.1 952,487 - +0.6 952,501 - +4.0 952,510 - +0.8 952,546 + +1.3 952,559 - -0.9 952,560 + +1.3 952,580 - MMP_RS05000 0.12 -1.2 952,659 - MMP_RS05000 0.26 +1.5 952,659 - MMP_RS05000 0.26 -0.1 952,704 + MMP_RS05000 0.34 -1.8 952,855 - MMP_RS05000 0.60 -0.1 952,934 - MMP_RS05000 0.73 +3.3 952,934 - MMP_RS05000 0.73 +1.3 952,934 - MMP_RS05000 0.73 +0.3 952,938 + MMP_RS05000 0.74 +4.6 952,938 + MMP_RS05000 0.74 +0.3 952,947 + MMP_RS05000 0.76 -1.1 952,957 + MMP_RS05000 0.77 -1.0 953,005 - MMP_RS05000 0.86 +0.8 953,005 - MMP_RS05000 0.86 +2.9 953,006 + MMP_RS05000 0.86 +0.6 953,031 + +0.1 953,109 - +0.6 953,121 - -1.0 953,121 - -0.5 953,121 - -1.0 953,142 - -0.1 953,143 + +0.6 953,160 + -1.2 953,175 - +1.7 953,175 - -1.0 953,186 - -0.1 953,186 - -1.7 953,187 + +1.1 953,187 + -1.0 953,206 - -1.4 953,393 - -0.5 953,393 - -2.0
Or see this region's nucleotide sequence