Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04665 and MMP_RS04670 are separated by 301 nucleotides MMP_RS04670 and MMP_RS04675 are separated by 9 nucleotides MMP_RS04675 and MMP_RS04680 are separated by 29 nucleotides
MMP_RS04665: MMP_RS04665 - SBBP repeat-containing protein, at 891,545 to 894,625
_RS04665
MMP_RS04670: MMP_RS04670 - selenouridine synthase SelU-like subunit, at 894,927 to 895,586
_RS04670
MMP_RS04675: MMP_RS04675 - selenouridine synthase SelU-like subunit, at 895,596 to 896,249
_RS04675
MMP_RS04680: MMP_RS04680 - NOG1 family protein, at 896,279 to 897,316
_RS04680
Position (kb) 894
895
896 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 893.965 kb on + strand, within MMP_RS04665 at 893.992 kb on + strand, within MMP_RS04665 at 893.992 kb on + strand, within MMP_RS04665 at 894.025 kb on - strand, within MMP_RS04665 at 894.026 kb on + strand, within MMP_RS04665 at 894.026 kb on + strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.031 kb on + strand, within MMP_RS04665 at 894.048 kb on - strand, within MMP_RS04665 at 894.049 kb on + strand, within MMP_RS04665 at 894.049 kb on + strand, within MMP_RS04665 at 894.061 kb on - strand, within MMP_RS04665 at 894.068 kb on - strand, within MMP_RS04665 at 894.069 kb on + strand, within MMP_RS04665 at 894.069 kb on + strand, within MMP_RS04665 at 894.104 kb on + strand, within MMP_RS04665 at 894.130 kb on - strand, within MMP_RS04665 at 894.147 kb on - strand, within MMP_RS04665 at 894.152 kb on - strand, within MMP_RS04665 at 894.179 kb on + strand, within MMP_RS04665 at 894.179 kb on + strand, within MMP_RS04665 at 894.193 kb on - strand, within MMP_RS04665 at 894.194 kb on + strand, within MMP_RS04665 at 894.196 kb on + strand, within MMP_RS04665 at 894.207 kb on - strand, within MMP_RS04665 at 894.221 kb on - strand, within MMP_RS04665 at 894.252 kb on - strand, within MMP_RS04665 at 894.303 kb on - strand, within MMP_RS04665 at 894.345 kb on - strand at 894.346 kb on + strand at 894.445 kb on + strand at 894.445 kb on + strand at 894.465 kb on - strand at 894.465 kb on - strand at 894.465 kb on - strand at 894.466 kb on + strand at 894.466 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.483 kb on - strand at 894.484 kb on + strand at 894.538 kb on - strand at 894.539 kb on + strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.650 kb on + strand at 894.665 kb on + strand at 894.665 kb on + strand at 894.666 kb on - strand at 894.680 kb on - strand at 894.681 kb on + strand at 894.727 kb on + strand at 894.757 kb on - strand at 894.757 kb on - strand at 894.758 kb on + strand at 894.762 kb on + strand at 894.804 kb on - strand at 894.805 kb on + strand at 894.809 kb on - strand at 894.810 kb on + strand at 894.892 kb on - strand at 894.903 kb on - strand at 894.906 kb on - strand at 894.911 kb on - strand at 894.911 kb on - strand at 894.922 kb on - strand at 894.988 kb on - strand at 895.000 kb on + strand, within MMP_RS04670 at 895.002 kb on + strand, within MMP_RS04670 at 895.006 kb on - strand, within MMP_RS04670 at 895.007 kb on + strand, within MMP_RS04670 at 895.007 kb on + strand, within MMP_RS04670 at 895.060 kb on + strand, within MMP_RS04670 at 895.067 kb on + strand, within MMP_RS04670 at 895.067 kb on + strand, within MMP_RS04670 at 895.094 kb on - strand, within MMP_RS04670 at 895.130 kb on - strand, within MMP_RS04670 at 895.186 kb on - strand, within MMP_RS04670 at 895.232 kb on - strand, within MMP_RS04670 at 895.233 kb on + strand, within MMP_RS04670 at 895.233 kb on + strand, within MMP_RS04670 at 895.235 kb on + strand, within MMP_RS04670 at 895.417 kb on + strand, within MMP_RS04670 at 895.546 kb on + strand at 895.578 kb on + strand at 895.625 kb on - strand at 895.644 kb on + strand at 895.649 kb on + strand at 895.679 kb on + strand, within MMP_RS04675 at 895.685 kb on + strand, within MMP_RS04675 at 895.757 kb on - strand, within MMP_RS04675 at 895.761 kb on + strand, within MMP_RS04675 at 895.777 kb on - strand, within MMP_RS04675 at 895.817 kb on - strand, within MMP_RS04675 at 895.827 kb on - strand, within MMP_RS04675 at 895.869 kb on + strand, within MMP_RS04675 at 895.906 kb on - strand, within MMP_RS04675 at 895.907 kb on + strand, within MMP_RS04675 at 895.909 kb on - strand, within MMP_RS04675 at 895.995 kb on - strand, within MMP_RS04675 at 896.017 kb on + strand, within MMP_RS04675 at 896.062 kb on - strand, within MMP_RS04675 at 896.062 kb on - strand, within MMP_RS04675 at 896.212 kb on - strand at 896.229 kb on - strand at 896.231 kb on - strand at 896.234 kb on - strand at 896.234 kb on - strand at 896.234 kb on - strand at 896.248 kb on + strand at 896.288 kb on - strand at 896.288 kb on - strand at 896.320 kb on - strand at 896.324 kb on - strand at 896.324 kb on - strand at 896.340 kb on + strand at 896.414 kb on + strand at 896.504 kb on + strand at 896.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 893,965 + MMP_RS04665 0.79 +0.8 893,992 + MMP_RS04665 0.79 +1.4 893,992 + MMP_RS04665 0.79 -1.5 894,025 - MMP_RS04665 0.80 +1.2 894,026 + MMP_RS04665 0.81 -0.5 894,026 + MMP_RS04665 0.81 -0.1 894,030 - MMP_RS04665 0.81 -0.4 894,030 - MMP_RS04665 0.81 -0.6 894,030 - MMP_RS04665 0.81 +1.0 894,030 - MMP_RS04665 0.81 +1.1 894,031 + MMP_RS04665 0.81 +0.9 894,048 - MMP_RS04665 0.81 +0.6 894,049 + MMP_RS04665 0.81 +1.6 894,049 + MMP_RS04665 0.81 -1.6 894,061 - MMP_RS04665 0.82 -0.3 894,068 - MMP_RS04665 0.82 -0.8 894,069 + MMP_RS04665 0.82 +0.1 894,069 + MMP_RS04665 0.82 -0.9 894,104 + MMP_RS04665 0.83 +0.5 894,130 - MMP_RS04665 0.84 -0.8 894,147 - MMP_RS04665 0.84 -1.3 894,152 - MMP_RS04665 0.85 -0.7 894,179 + MMP_RS04665 0.85 +1.2 894,179 + MMP_RS04665 0.85 +1.2 894,193 - MMP_RS04665 0.86 +0.0 894,194 + MMP_RS04665 0.86 +1.6 894,196 + MMP_RS04665 0.86 +2.9 894,207 - MMP_RS04665 0.86 +0.9 894,221 - MMP_RS04665 0.87 +0.1 894,252 - MMP_RS04665 0.88 +0.3 894,303 - MMP_RS04665 0.90 +0.1 894,345 - -0.9 894,346 + +0.6 894,445 + -1.6 894,445 + -1.6 894,465 - +0.2 894,465 - +0.8 894,465 - +0.4 894,466 + -1.3 894,466 + +1.0 894,470 + +1.0 894,470 + +0.6 894,470 + -0.5 894,483 - +1.0 894,484 + +0.8 894,538 - -0.6 894,539 + -0.2 894,649 - +0.2 894,649 - -1.4 894,649 - -0.1 894,649 - -0.2 894,650 + +0.2 894,665 + -0.8 894,665 + +1.2 894,666 - -0.4 894,680 - +2.0 894,681 + +1.1 894,727 + -0.6 894,757 - -0.8 894,757 - +1.3 894,758 + +0.4 894,762 + -0.5 894,804 - +0.5 894,805 + -0.4 894,809 - +1.5 894,810 + -0.2 894,892 - -0.6 894,903 - -0.9 894,906 - -2.0 894,911 - -0.7 894,911 - -0.1 894,922 - +0.7 894,988 - +0.5 895,000 + MMP_RS04670 0.11 +1.7 895,002 + MMP_RS04670 0.11 +0.9 895,006 - MMP_RS04670 0.12 +0.0 895,007 + MMP_RS04670 0.12 -1.9 895,007 + MMP_RS04670 0.12 +1.4 895,060 + MMP_RS04670 0.20 +0.9 895,067 + MMP_RS04670 0.21 +1.5 895,067 + MMP_RS04670 0.21 -3.1 895,094 - MMP_RS04670 0.25 +0.7 895,130 - MMP_RS04670 0.31 -0.1 895,186 - MMP_RS04670 0.39 -0.2 895,232 - MMP_RS04670 0.46 +0.6 895,233 + MMP_RS04670 0.46 -1.0 895,233 + MMP_RS04670 0.46 +1.2 895,235 + MMP_RS04670 0.47 -2.8 895,417 + MMP_RS04670 0.74 -0.2 895,546 + +0.9 895,578 + -1.3 895,625 - +0.8 895,644 + +2.7 895,649 + +1.1 895,679 + MMP_RS04675 0.13 +1.3 895,685 + MMP_RS04675 0.14 -0.3 895,757 - MMP_RS04675 0.25 +0.9 895,761 + MMP_RS04675 0.25 +0.6 895,777 - MMP_RS04675 0.28 +0.3 895,817 - MMP_RS04675 0.34 +1.3 895,827 - MMP_RS04675 0.35 -2.2 895,869 + MMP_RS04675 0.42 +1.3 895,906 - MMP_RS04675 0.47 +3.3 895,907 + MMP_RS04675 0.48 +1.0 895,909 - MMP_RS04675 0.48 +0.8 895,995 - MMP_RS04675 0.61 -0.2 896,017 + MMP_RS04675 0.64 +0.5 896,062 - MMP_RS04675 0.71 -0.2 896,062 - MMP_RS04675 0.71 -1.2 896,212 - -1.8 896,229 - +1.4 896,231 - -0.8 896,234 - +0.9 896,234 - -0.3 896,234 - +0.0 896,248 + +1.0 896,288 - -0.8 896,288 - +0.4 896,320 - -1.3 896,324 - +2.2 896,324 - +0.3 896,340 + +0.7 896,414 + -2.5 896,504 + -1.7 896,575 + -2.4
Or see this region's nucleotide sequence