Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04400

Experiment: McCas_H2_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_H2_complete Antimycin A 0.01 mM
837,287	-		MMP_RS04390	0.35	-0.8
837,287	-		MMP_RS04390	0.35	-0.1
837,314	-		MMP_RS04390	0.46	+0.1
837,315	+		MMP_RS04390	0.46	-0.1
837,356	-		MMP_RS04390	0.64	-1.7
837,356	-		MMP_RS04390	0.64	-0.3
837,356	-		MMP_RS04390	0.64	+0.4
837,450	+				+1.5
837,500	-				+0.3
837,500	-				+0.0
837,500	-				-0.0
837,502	-				+1.5
837,502	-				-0.0
837,502	-				+1.1
837,503	+				+1.6
837,503	+				+0.3
837,504	-				+0.8
837,504	-				-0.5
837,505	+				-1.8
837,538	+				-0.8
837,560	+				+1.4
837,584	-		MMP_RS04395	0.11	+0.5
837,584	-		MMP_RS04395	0.11	+0.2
837,584	-		MMP_RS04395	0.11	+0.5
837,585	+		MMP_RS04395	0.11	-1.5
837,585	+		MMP_RS04395	0.11	-1.2
837,597	+		MMP_RS04395	0.13	-0.9
837,600	-		MMP_RS04395	0.13	+2.0
837,631	+		MMP_RS04395	0.17	-1.2
837,631	+		MMP_RS04395	0.17	-0.9
837,805	+		MMP_RS04395	0.41	+0.7
837,861	-		MMP_RS04395	0.48	+1.0
837,941	-		MMP_RS04395	0.59	+1.0
837,942	-		MMP_RS04395	0.59	-0.9
837,971	-		MMP_RS04395	0.63	+2.1
837,972	+		MMP_RS04395	0.64	+2.0
837,972	+		MMP_RS04395	0.64	+0.2
837,973	-		MMP_RS04395	0.64	-0.7
837,973	-		MMP_RS04395	0.64	+0.3
837,974	+		MMP_RS04395	0.64	-0.6
837,986	-		MMP_RS04395	0.65	+1.1
837,986	-		MMP_RS04395	0.65	-1.2
838,011	-		MMP_RS04395	0.69	+0.3
838,012	+		MMP_RS04395	0.69	+0.1
838,012	+		MMP_RS04395	0.69	-0.8
838,068	+		MMP_RS04395	0.77	-0.6
838,070	-		MMP_RS04395	0.77	+0.1
838,126	-		MMP_RS04395	0.84	+2.3
838,138	+		MMP_RS04395	0.86	+1.6
838,142	+		MMP_RS04395	0.87	+0.6
838,181	-				+3.1
838,182	+				-1.2
838,191	+				+1.6
838,247	-				-0.7
838,247	-				+0.9
838,247	-				-1.0
838,248	+				+1.2
838,248	+				+0.9
838,249	-				+0.6
838,249	-				+1.0
838,250	+				+0.5
838,252	-				-0.4
838,252	-				+0.1
838,252	-				-0.8
838,255	-				-0.9
838,261	-				-0.1
838,261	-				+0.5
838,381	-		MMP_RS04400	0.28	-0.3
838,430	+		MMP_RS04400	0.41	+1.7
838,439	-		MMP_RS04400	0.44	+0.1
838,440	+		MMP_RS04400	0.44	+1.5
838,440	+		MMP_RS04400	0.44	-1.5
838,440	+		MMP_RS04400	0.44	-0.7
838,441	-		MMP_RS04400	0.45	+1.2
838,441	-		MMP_RS04400	0.45	-1.8
838,441	-		MMP_RS04400	0.45	-0.5
838,441	-		MMP_RS04400	0.45	-1.8
838,510	-		MMP_RS04400	0.64	-0.8
838,534	-		MMP_RS04400	0.71	-1.0
838,541	-		MMP_RS04400	0.73	-2.9
838,541	-		MMP_RS04400	0.73	+0.3
838,554	-		MMP_RS04400	0.76	+1.8
838,560	+		MMP_RS04400	0.78	+0.0
838,572	-		MMP_RS04400	0.81	-0.4
838,573	+		MMP_RS04400	0.82	-0.8
838,584	-		MMP_RS04400	0.85	+1.7
838,609	-				+0.3
838,611	-				-1.5
838,686	+				+2.0
838,689	+				+1.2
838,732	+				+0.8
838,758	-				+1.3
838,846	+				+1.3
838,849	-				-0.0
838,849	-				+1.1
838,849	-				+1.0
838,850	+				-1.1
838,850	+				+1.2
838,852	+				+0.3
838,859	-				+0.2
838,863	-				+0.7
838,867	-				-2.7
838,903	+				+0.6
838,927	+		MMP_RS04405	0.11	-0.8
838,943	+		MMP_RS04405	0.17	-0.2
838,990	-		MMP_RS04405	0.35	+0.4
838,993	-		MMP_RS04405	0.36	+1.5
839,004	+		MMP_RS04405	0.40	+1.4
839,016	-		MMP_RS04405	0.44	+0.4
839,026	-		MMP_RS04405	0.48	+1.3
839,049	-		MMP_RS04405	0.57	-0.9
839,050	+		MMP_RS04405	0.57	+0.8
839,065	-		MMP_RS04405	0.63	+0.8
839,076	+		MMP_RS04405	0.67	+1.2
839,138	-		MMP_RS04405	0.90	-1.4
839,169	+				+0.9
839,174	+				-0.0
839,263	+				-0.7
839,599	-		MMP_RS04410	0.64	-1.0
839,620	-		MMP_RS04410	0.67	-1.1