Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04260 and MMP_RS04265 are separated by 10 nucleotides MMP_RS04265 and MMP_RS04270 are separated by 13 nucleotides MMP_RS04270 and MMP_RS04275 are separated by 358 nucleotides MMP_RS04275 and MMP_RS04280 are separated by 16 nucleotides
MMP_RS04260: MMP_RS04260 - coenzyme F420 hydrogenase subunit gamma, at 812,509 to 813,237
_RS04260
MMP_RS04265: MMP_RS04265 - coenzyme F420-reducing hydrogenase FrhD protein, at 813,248 to 813,748
_RS04265
MMP_RS04270: MMP_RS04270 - coenzyme F420 hydrogenase subunit alpha, at 813,762 to 814,994
_RS04270
MMP_RS04275: MMP_RS04275 - hydrogenase iron-sulfur subunit, at 815,353 to 815,775
_RS04275
MMP_RS04280: MMP_RS04280 - coenzyme F420-non-reducing hydrogenase subunit gamma, at 815,792 to 816,694
_RS04280
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 812.913 kb on - strand, within MMP_RS04260 at 812.913 kb on - strand, within MMP_RS04260 at 813.010 kb on - strand, within MMP_RS04260 at 813.133 kb on - strand, within MMP_RS04260 at 813.569 kb on - strand, within MMP_RS04265 at 813.570 kb on + strand, within MMP_RS04265 at 813.696 kb on + strand, within MMP_RS04265 at 813.764 kb on + strand at 813.768 kb on - strand at 813.769 kb on + strand at 813.813 kb on - strand at 813.943 kb on - strand, within MMP_RS04270 at 813.947 kb on - strand, within MMP_RS04270 at 814.144 kb on + strand, within MMP_RS04270 at 814.225 kb on - strand, within MMP_RS04270 at 814.238 kb on - strand, within MMP_RS04270 at 814.252 kb on + strand, within MMP_RS04270 at 814.280 kb on + strand, within MMP_RS04270 at 814.568 kb on - strand, within MMP_RS04270 at 814.568 kb on - strand, within MMP_RS04270 at 814.618 kb on - strand, within MMP_RS04270 at 814.641 kb on - strand, within MMP_RS04270 at 814.659 kb on - strand, within MMP_RS04270 at 814.770 kb on - strand, within MMP_RS04270 at 814.890 kb on - strand at 814.894 kb on - strand at 814.895 kb on + strand at 815.283 kb on + strand at 815.407 kb on - strand, within MMP_RS04275 at 815.407 kb on - strand, within MMP_RS04275 at 815.422 kb on + strand, within MMP_RS04275 at 815.436 kb on - strand, within MMP_RS04275 at 815.446 kb on - strand, within MMP_RS04275 at 815.460 kb on + strand, within MMP_RS04275 at 815.465 kb on - strand, within MMP_RS04275 at 815.465 kb on - strand, within MMP_RS04275 at 815.510 kb on - strand, within MMP_RS04275 at 815.521 kb on + strand, within MMP_RS04275 at 815.621 kb on + strand, within MMP_RS04275 at 815.706 kb on - strand, within MMP_RS04275 at 815.770 kb on + strand at 815.778 kb on + strand at 815.778 kb on + strand at 815.781 kb on + strand at 815.781 kb on + strand at 815.781 kb on + strand at 815.781 kb on + strand at 815.807 kb on + strand at 815.807 kb on + strand at 815.841 kb on - strand at 815.841 kb on - strand at 815.842 kb on + strand at 815.856 kb on - strand at 815.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 812,913 - MMP_RS04260 0.55 +3.1 812,913 - MMP_RS04260 0.55 -1.5 813,010 - MMP_RS04260 0.69 +0.6 813,133 - MMP_RS04260 0.86 -0.5 813,569 - MMP_RS04265 0.64 +0.4 813,570 + MMP_RS04265 0.64 -1.3 813,696 + MMP_RS04265 0.89 +0.1 813,764 + +0.7 813,768 - -0.3 813,769 + +0.7 813,813 - +0.1 813,943 - MMP_RS04270 0.15 +1.4 813,947 - MMP_RS04270 0.15 +1.4 814,144 + MMP_RS04270 0.31 +0.5 814,225 - MMP_RS04270 0.38 +0.5 814,238 - MMP_RS04270 0.39 -1.3 814,252 + MMP_RS04270 0.40 +2.1 814,280 + MMP_RS04270 0.42 +0.6 814,568 - MMP_RS04270 0.65 -2.8 814,568 - MMP_RS04270 0.65 +1.6 814,618 - MMP_RS04270 0.69 +1.4 814,641 - MMP_RS04270 0.71 -0.9 814,659 - MMP_RS04270 0.73 +0.4 814,770 - MMP_RS04270 0.82 +1.9 814,890 - +0.0 814,894 - -0.5 814,895 + +0.7 815,283 + +0.2 815,407 - MMP_RS04275 0.13 -0.9 815,407 - MMP_RS04275 0.13 +0.4 815,422 + MMP_RS04275 0.16 -1.3 815,436 - MMP_RS04275 0.20 -0.4 815,446 - MMP_RS04275 0.22 +0.3 815,460 + MMP_RS04275 0.25 +2.1 815,465 - MMP_RS04275 0.26 +1.1 815,465 - MMP_RS04275 0.26 -0.0 815,510 - MMP_RS04275 0.37 -0.7 815,521 + MMP_RS04275 0.40 -1.0 815,621 + MMP_RS04275 0.63 -0.3 815,706 - MMP_RS04275 0.83 -1.3 815,770 + -0.6 815,778 + +1.0 815,778 + +0.1 815,781 + -0.5 815,781 + +0.5 815,781 + +1.4 815,781 + -1.5 815,807 + -0.4 815,807 + +1.5 815,841 - -1.6 815,841 - -0.6 815,842 + +0.5 815,856 - +2.4 815,856 - +0.6
Or see this region's nucleotide sequence