Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04180 and MMP_RS04185 are separated by 11 nucleotides MMP_RS04185 and MMP_RS04190 are separated by 87 nucleotides MMP_RS04190 and MMP_RS04195 are separated by 217 nucleotides
MMP_RS04180: MMP_RS04180 - iron-containing alcohol dehydrogenase, at 794,946 to 796,115
_RS04180
MMP_RS04185: MMP_RS04185 - aldo/keto reductase, at 796,127 to 797,239
_RS04185
MMP_RS04190: MMP_RS04190 - hypothetical protein, at 797,327 to 797,842
_RS04190
MMP_RS04195: MMP_RS04195 - flavodoxin, at 798,060 to 798,596
_RS04195
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 795.133 kb on - strand, within MMP_RS04180 at 795.134 kb on + strand, within MMP_RS04180 at 795.371 kb on - strand, within MMP_RS04180 at 795.372 kb on + strand, within MMP_RS04180 at 795.565 kb on + strand, within MMP_RS04180 at 795.565 kb on + strand, within MMP_RS04180 at 795.568 kb on - strand, within MMP_RS04180 at 795.600 kb on - strand, within MMP_RS04180 at 795.600 kb on - strand, within MMP_RS04180 at 795.600 kb on - strand, within MMP_RS04180 at 795.601 kb on + strand, within MMP_RS04180 at 795.601 kb on + strand, within MMP_RS04180 at 795.850 kb on - strand, within MMP_RS04180 at 795.851 kb on + strand, within MMP_RS04180 at 795.883 kb on - strand, within MMP_RS04180 at 795.940 kb on - strand, within MMP_RS04180 at 795.968 kb on - strand, within MMP_RS04180 at 795.969 kb on + strand, within MMP_RS04180 at 795.982 kb on + strand, within MMP_RS04180 at 795.989 kb on - strand, within MMP_RS04180 at 796.050 kb on + strand at 796.069 kb on - strand at 796.070 kb on + strand at 796.108 kb on + strand at 796.169 kb on + strand at 796.236 kb on + strand at 796.278 kb on + strand, within MMP_RS04185 at 796.304 kb on + strand, within MMP_RS04185 at 796.333 kb on - strand, within MMP_RS04185 at 796.333 kb on - strand, within MMP_RS04185 at 796.347 kb on - strand, within MMP_RS04185 at 796.347 kb on - strand, within MMP_RS04185 at 796.445 kb on + strand, within MMP_RS04185 at 796.448 kb on + strand, within MMP_RS04185 at 796.600 kb on - strand, within MMP_RS04185 at 796.635 kb on - strand, within MMP_RS04185 at 796.861 kb on + strand, within MMP_RS04185 at 796.881 kb on - strand, within MMP_RS04185 at 796.916 kb on - strand, within MMP_RS04185 at 796.919 kb on - strand, within MMP_RS04185 at 797.002 kb on - strand, within MMP_RS04185 at 797.047 kb on + strand, within MMP_RS04185 at 797.055 kb on + strand, within MMP_RS04185 at 797.099 kb on - strand, within MMP_RS04185 at 797.100 kb on + strand, within MMP_RS04185 at 797.172 kb on - strand at 797.273 kb on - strand at 797.305 kb on + strand at 797.361 kb on - strand at 797.362 kb on + strand at 797.362 kb on + strand at 797.362 kb on + strand at 797.365 kb on + strand at 797.403 kb on + strand, within MMP_RS04190 at 797.536 kb on + strand, within MMP_RS04190 at 797.597 kb on + strand, within MMP_RS04190 at 797.709 kb on + strand, within MMP_RS04190 at 797.723 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.810 kb on + strand at 797.810 kb on + strand at 797.818 kb on - strand at 797.821 kb on + strand at 797.821 kb on + strand at 797.859 kb on - strand at 797.959 kb on + strand at 797.959 kb on + strand at 798.002 kb on + strand at 798.090 kb on + strand at 798.090 kb on + strand at 798.179 kb on + strand, within MMP_RS04195
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 795,133 - MMP_RS04180 0.16 +1.2 795,134 + MMP_RS04180 0.16 -2.0 795,371 - MMP_RS04180 0.36 +0.4 795,372 + MMP_RS04180 0.36 -1.0 795,565 + MMP_RS04180 0.53 +3.6 795,565 + MMP_RS04180 0.53 +2.0 795,568 - MMP_RS04180 0.53 -0.3 795,600 - MMP_RS04180 0.56 +2.9 795,600 - MMP_RS04180 0.56 +1.2 795,600 - MMP_RS04180 0.56 -0.4 795,601 + MMP_RS04180 0.56 +1.3 795,601 + MMP_RS04180 0.56 -0.9 795,850 - MMP_RS04180 0.77 -0.1 795,851 + MMP_RS04180 0.77 +0.7 795,883 - MMP_RS04180 0.80 -0.5 795,940 - MMP_RS04180 0.85 -0.0 795,968 - MMP_RS04180 0.87 +1.3 795,969 + MMP_RS04180 0.87 +0.1 795,982 + MMP_RS04180 0.89 +0.7 795,989 - MMP_RS04180 0.89 +0.5 796,050 + +0.4 796,069 - +0.3 796,070 + -0.6 796,108 + +3.2 796,169 + +0.9 796,236 + +0.4 796,278 + MMP_RS04185 0.14 -0.2 796,304 + MMP_RS04185 0.16 +0.6 796,333 - MMP_RS04185 0.19 +0.9 796,333 - MMP_RS04185 0.19 +1.6 796,347 - MMP_RS04185 0.20 +0.9 796,347 - MMP_RS04185 0.20 -2.2 796,445 + MMP_RS04185 0.29 +1.5 796,448 + MMP_RS04185 0.29 +0.1 796,600 - MMP_RS04185 0.42 +1.7 796,635 - MMP_RS04185 0.46 +0.5 796,861 + MMP_RS04185 0.66 +0.5 796,881 - MMP_RS04185 0.68 +1.9 796,916 - MMP_RS04185 0.71 +2.9 796,919 - MMP_RS04185 0.71 +1.1 797,002 - MMP_RS04185 0.79 +0.4 797,047 + MMP_RS04185 0.83 +2.9 797,055 + MMP_RS04185 0.83 -0.8 797,099 - MMP_RS04185 0.87 -1.7 797,100 + MMP_RS04185 0.87 +1.4 797,172 - +2.3 797,273 - +0.4 797,305 + -0.2 797,361 - -0.6 797,362 + +0.5 797,362 + -1.1 797,362 + -0.8 797,365 + +1.8 797,403 + MMP_RS04190 0.15 -1.2 797,536 + MMP_RS04190 0.41 +0.6 797,597 + MMP_RS04190 0.52 +1.2 797,709 + MMP_RS04190 0.74 +0.9 797,723 - MMP_RS04190 0.77 +0.7 797,728 - MMP_RS04190 0.78 +0.1 797,728 - MMP_RS04190 0.78 +0.8 797,810 + +0.1 797,810 + -1.1 797,818 - -0.4 797,821 + -0.9 797,821 + -0.1 797,859 - -0.8 797,959 + -0.4 797,959 + +0.1 798,002 + -2.0 798,090 + -0.1 798,090 + +0.8 798,179 + MMP_RS04195 0.22 +0.7
Or see this region's nucleotide sequence