Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04175 and MMP_RS08975 are separated by 258 nucleotides MMP_RS08975 and MMP_RS04180 are separated by 196 nucleotides MMP_RS04180 and MMP_RS04185 are separated by 11 nucleotides
MMP_RS04175: MMP_RS04175 - permease, at 793,433 to 794,335
_RS04175
MMP_RS08975: MMP_RS08975 - hypothetical protein, at 794,594 to 794,749
_RS08975
MMP_RS04180: MMP_RS04180 - iron-containing alcohol dehydrogenase, at 794,946 to 796,115
_RS04180
MMP_RS04185: MMP_RS04185 - aldo/keto reductase, at 796,127 to 797,239
_RS04185
Position (kb) 794
795
796
797 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 793.967 kb on + strand, within MMP_RS04175 at 793.986 kb on + strand, within MMP_RS04175 at 794.027 kb on - strand, within MMP_RS04175 at 794.027 kb on - strand, within MMP_RS04175 at 794.028 kb on + strand, within MMP_RS04175 at 794.028 kb on + strand, within MMP_RS04175 at 794.113 kb on + strand, within MMP_RS04175 at 794.114 kb on - strand, within MMP_RS04175 at 794.131 kb on - strand, within MMP_RS04175 at 794.146 kb on - strand, within MMP_RS04175 at 794.147 kb on + strand, within MMP_RS04175 at 794.274 kb on + strand at 794.285 kb on + strand at 794.291 kb on + strand at 794.291 kb on + strand at 794.293 kb on + strand at 794.333 kb on - strand at 794.333 kb on - strand at 794.334 kb on + strand at 794.368 kb on - strand at 794.373 kb on + strand at 794.395 kb on + strand at 794.399 kb on + strand at 794.409 kb on - strand at 794.450 kb on - strand at 794.451 kb on + strand at 794.459 kb on - strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.461 kb on - strand at 794.461 kb on - strand at 794.461 kb on - strand at 794.462 kb on + strand at 794.462 kb on + strand at 794.462 kb on + strand at 794.462 kb on + strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.464 kb on + strand at 794.464 kb on + strand at 794.464 kb on + strand at 794.465 kb on - strand at 794.465 kb on - strand at 794.469 kb on + strand at 794.518 kb on + strand at 794.590 kb on - strand at 794.597 kb on - strand at 794.597 kb on - strand at 794.597 kb on - strand at 794.597 kb on - strand at 794.598 kb on + strand at 794.598 kb on + strand at 794.606 kb on - strand at 794.644 kb on + strand, within MMP_RS08975 at 794.668 kb on + strand, within MMP_RS08975 at 794.690 kb on + strand, within MMP_RS08975 at 794.690 kb on + strand, within MMP_RS08975 at 794.819 kb on - strand at 794.840 kb on - strand at 794.841 kb on + strand at 794.844 kb on - strand at 794.849 kb on - strand at 794.850 kb on + strand at 794.850 kb on + strand at 794.850 kb on + strand at 794.850 kb on + strand at 794.851 kb on - strand at 794.851 kb on - strand at 794.852 kb on + strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.856 kb on + strand at 794.908 kb on - strand at 794.908 kb on - strand at 794.911 kb on - strand at 794.945 kb on - strand at 794.961 kb on - strand at 794.961 kb on - strand at 795.122 kb on + strand, within MMP_RS04180 at 795.133 kb on - strand, within MMP_RS04180 at 795.134 kb on + strand, within MMP_RS04180 at 795.371 kb on - strand, within MMP_RS04180 at 795.372 kb on + strand, within MMP_RS04180 at 795.565 kb on + strand, within MMP_RS04180 at 795.565 kb on + strand, within MMP_RS04180 at 795.568 kb on - strand, within MMP_RS04180 at 795.600 kb on - strand, within MMP_RS04180 at 795.600 kb on - strand, within MMP_RS04180 at 795.600 kb on - strand, within MMP_RS04180 at 795.601 kb on + strand, within MMP_RS04180 at 795.601 kb on + strand, within MMP_RS04180 at 795.850 kb on - strand, within MMP_RS04180 at 795.851 kb on + strand, within MMP_RS04180 at 795.883 kb on - strand, within MMP_RS04180 at 795.940 kb on - strand, within MMP_RS04180 at 795.968 kb on - strand, within MMP_RS04180 at 795.969 kb on + strand, within MMP_RS04180 at 795.982 kb on + strand, within MMP_RS04180 at 795.989 kb on - strand, within MMP_RS04180 at 796.050 kb on + strand at 796.069 kb on - strand at 796.070 kb on + strand at 796.108 kb on + strand at 796.169 kb on + strand at 796.236 kb on + strand at 796.278 kb on + strand, within MMP_RS04185 at 796.304 kb on + strand, within MMP_RS04185 at 796.333 kb on - strand, within MMP_RS04185 at 796.333 kb on - strand, within MMP_RS04185 at 796.347 kb on - strand, within MMP_RS04185 at 796.347 kb on - strand, within MMP_RS04185 at 796.445 kb on + strand, within MMP_RS04185 at 796.448 kb on + strand, within MMP_RS04185 at 796.600 kb on - strand, within MMP_RS04185 at 796.635 kb on - strand, within MMP_RS04185 at 796.861 kb on + strand, within MMP_RS04185 at 796.881 kb on - strand, within MMP_RS04185 at 796.916 kb on - strand, within MMP_RS04185 at 796.919 kb on - strand, within MMP_RS04185 at 797.002 kb on - strand, within MMP_RS04185 at 797.047 kb on + strand, within MMP_RS04185 at 797.055 kb on + strand, within MMP_RS04185 at 797.099 kb on - strand, within MMP_RS04185 at 797.100 kb on + strand, within MMP_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 793,967 + MMP_RS04175 0.59 +0.2 793,986 + MMP_RS04175 0.61 +0.4 794,027 - MMP_RS04175 0.66 -0.0 794,027 - MMP_RS04175 0.66 -0.5 794,028 + MMP_RS04175 0.66 +1.5 794,028 + MMP_RS04175 0.66 +0.1 794,113 + MMP_RS04175 0.75 +1.5 794,114 - MMP_RS04175 0.75 +0.4 794,131 - MMP_RS04175 0.77 +1.1 794,146 - MMP_RS04175 0.79 -0.4 794,147 + MMP_RS04175 0.79 -1.3 794,274 + +2.5 794,285 + -1.8 794,291 + -1.3 794,291 + -0.2 794,293 + +0.7 794,333 - +1.1 794,333 - +1.0 794,334 + +1.1 794,368 - +0.1 794,373 + +0.5 794,395 + +0.4 794,399 + +0.1 794,409 - +1.1 794,450 - +1.7 794,451 + +1.4 794,459 - -1.4 794,460 + -0.1 794,460 + +2.7 794,460 + -1.5 794,460 + +0.3 794,460 + -0.6 794,460 + -1.2 794,461 - +1.0 794,461 - +2.1 794,461 - -0.1 794,462 + +1.5 794,462 + -0.7 794,462 + +0.2 794,462 + -0.1 794,463 - +0.0 794,463 - +0.9 794,463 - +0.9 794,463 - +1.0 794,463 - -1.2 794,463 - -1.7 794,464 + -0.9 794,464 + +1.4 794,464 + +2.0 794,465 - +0.3 794,465 - -0.0 794,469 + +0.8 794,518 + +0.3 794,590 - +1.0 794,597 - -1.5 794,597 - +1.3 794,597 - +0.0 794,597 - -0.2 794,598 + +0.4 794,598 + +0.0 794,606 - -0.7 794,644 + MMP_RS08975 0.32 -0.1 794,668 + MMP_RS08975 0.47 -0.4 794,690 + MMP_RS08975 0.62 +0.0 794,690 + MMP_RS08975 0.62 +1.1 794,819 - -1.9 794,840 - +0.9 794,841 + +0.2 794,844 - +1.0 794,849 - +0.5 794,850 + +0.3 794,850 + +0.8 794,850 + -0.1 794,850 + +0.1 794,851 - +1.0 794,851 - +0.2 794,852 + +0.1 794,853 - -0.1 794,853 - +1.0 794,853 - -0.1 794,853 - -1.3 794,853 - +0.4 794,853 - +1.1 794,854 + -0.5 794,854 + -1.1 794,854 + +0.2 794,854 + +0.4 794,854 + +0.4 794,854 + -0.6 794,854 + -1.6 794,854 + +0.2 794,854 + +1.2 794,854 + +1.8 794,856 + -1.4 794,908 - +0.4 794,908 - +0.4 794,911 - +0.8 794,945 - -0.5 794,961 - -0.1 794,961 - +0.1 795,122 + MMP_RS04180 0.15 +1.7 795,133 - MMP_RS04180 0.16 +1.2 795,134 + MMP_RS04180 0.16 -2.0 795,371 - MMP_RS04180 0.36 +0.4 795,372 + MMP_RS04180 0.36 -1.0 795,565 + MMP_RS04180 0.53 +3.6 795,565 + MMP_RS04180 0.53 +2.0 795,568 - MMP_RS04180 0.53 -0.3 795,600 - MMP_RS04180 0.56 +2.9 795,600 - MMP_RS04180 0.56 +1.2 795,600 - MMP_RS04180 0.56 -0.4 795,601 + MMP_RS04180 0.56 +1.3 795,601 + MMP_RS04180 0.56 -0.9 795,850 - MMP_RS04180 0.77 -0.1 795,851 + MMP_RS04180 0.77 +0.7 795,883 - MMP_RS04180 0.80 -0.5 795,940 - MMP_RS04180 0.85 -0.0 795,968 - MMP_RS04180 0.87 +1.3 795,969 + MMP_RS04180 0.87 +0.1 795,982 + MMP_RS04180 0.89 +0.7 795,989 - MMP_RS04180 0.89 +0.5 796,050 + +0.4 796,069 - +0.3 796,070 + -0.6 796,108 + +3.2 796,169 + +0.9 796,236 + +0.4 796,278 + MMP_RS04185 0.14 -0.2 796,304 + MMP_RS04185 0.16 +0.6 796,333 - MMP_RS04185 0.19 +0.9 796,333 - MMP_RS04185 0.19 +1.6 796,347 - MMP_RS04185 0.20 +0.9 796,347 - MMP_RS04185 0.20 -2.2 796,445 + MMP_RS04185 0.29 +1.5 796,448 + MMP_RS04185 0.29 +0.1 796,600 - MMP_RS04185 0.42 +1.7 796,635 - MMP_RS04185 0.46 +0.5 796,861 + MMP_RS04185 0.66 +0.5 796,881 - MMP_RS04185 0.68 +1.9 796,916 - MMP_RS04185 0.71 +2.9 796,919 - MMP_RS04185 0.71 +1.1 797,002 - MMP_RS04185 0.79 +0.4 797,047 + MMP_RS04185 0.83 +2.9 797,055 + MMP_RS04185 0.83 -0.8 797,099 - MMP_RS04185 0.87 -1.7 797,100 + MMP_RS04185 0.87 +1.4
Or see this region's nucleotide sequence