Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04075 and MMP_RS04080 are separated by 405 nucleotides MMP_RS04080 and MMP_RS04085 are separated by 287 nucleotides MMP_RS04085 and MMP_RS04090 overlap by 23 nucleotides MMP_RS04090 and MMP_RS04095 are separated by 103 nucleotides
MMP_RS04075: MMP_RS04075 - hypothetical protein, at 772,684 to 773,019
_RS04075
MMP_RS04080: MMP_RS04080 - tRNA-Ser, at 773,425 to 773,511
_RS04080
MMP_RS04085: MMP_RS04085 - hypothetical protein, at 773,799 to 775,298
_RS04085
MMP_RS04090: MMP_RS04090 - hypothetical protein, at 775,276 to 775,686
_RS04090
MMP_RS04095: MMP_RS04095 - serine protease, at 775,790 to 776,566
_RS04095
Position (kb) 773
774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 773.208 kb on - strand at 773.251 kb on + strand at 773.386 kb on + strand at 773.630 kb on + strand at 773.633 kb on - strand at 773.633 kb on - strand at 773.635 kb on - strand at 773.636 kb on + strand at 773.636 kb on + strand at 773.716 kb on - strand at 773.717 kb on + strand at 773.717 kb on + strand at 773.744 kb on + strand at 773.759 kb on - strand at 773.759 kb on - strand at 773.762 kb on - strand at 773.769 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.839 kb on + strand at 774.035 kb on - strand, within MMP_RS04085 at 774.096 kb on - strand, within MMP_RS04085 at 774.097 kb on + strand, within MMP_RS04085 at 774.114 kb on - strand, within MMP_RS04085 at 774.114 kb on - strand, within MMP_RS04085 at 774.115 kb on + strand, within MMP_RS04085 at 774.187 kb on - strand, within MMP_RS04085 at 774.224 kb on - strand, within MMP_RS04085 at 774.255 kb on + strand, within MMP_RS04085 at 774.277 kb on - strand, within MMP_RS04085 at 774.277 kb on - strand, within MMP_RS04085 at 774.283 kb on - strand, within MMP_RS04085 at 774.283 kb on - strand, within MMP_RS04085 at 774.284 kb on + strand, within MMP_RS04085 at 774.284 kb on + strand, within MMP_RS04085 at 774.295 kb on - strand, within MMP_RS04085 at 774.296 kb on + strand, within MMP_RS04085 at 774.329 kb on - strand, within MMP_RS04085 at 774.563 kb on - strand, within MMP_RS04085 at 774.582 kb on - strand, within MMP_RS04085 at 774.615 kb on - strand, within MMP_RS04085 at 774.655 kb on - strand, within MMP_RS04085 at 774.732 kb on - strand, within MMP_RS04085 at 774.857 kb on - strand, within MMP_RS04085 at 774.887 kb on - strand, within MMP_RS04085 at 774.890 kb on + strand, within MMP_RS04085 at 774.918 kb on - strand, within MMP_RS04085 at 774.918 kb on - strand, within MMP_RS04085 at 774.918 kb on - strand, within MMP_RS04085 at 774.918 kb on - strand, within MMP_RS04085 at 774.918 kb on - strand, within MMP_RS04085 at 774.918 kb on - strand, within MMP_RS04085 at 774.919 kb on + strand, within MMP_RS04085 at 774.919 kb on + strand, within MMP_RS04085 at 774.919 kb on + strand, within MMP_RS04085 at 774.920 kb on - strand, within MMP_RS04085 at 774.920 kb on - strand, within MMP_RS04085 at 774.959 kb on - strand, within MMP_RS04085 at 774.967 kb on - strand, within MMP_RS04085 at 774.973 kb on + strand, within MMP_RS04085 at 774.975 kb on + strand, within MMP_RS04085 at 774.998 kb on - strand, within MMP_RS04085 at 775.175 kb on + strand at 775.196 kb on - strand at 775.196 kb on - strand at 775.201 kb on - strand at 775.286 kb on - strand at 775.369 kb on - strand, within MMP_RS04090 at 775.448 kb on - strand, within MMP_RS04090 at 775.449 kb on + strand, within MMP_RS04090 at 775.600 kb on + strand, within MMP_RS04090 at 775.605 kb on - strand, within MMP_RS04090 at 775.670 kb on - strand at 775.684 kb on - strand at 775.685 kb on + strand at 775.689 kb on - strand at 775.717 kb on + strand at 775.757 kb on - strand at 775.757 kb on - strand at 775.761 kb on - strand at 775.774 kb on + strand at 775.785 kb on - strand at 775.786 kb on + strand at 775.802 kb on + strand at 776.027 kb on - strand, within MMP_RS04095 at 776.027 kb on - strand, within MMP_RS04095 at 776.028 kb on + strand, within MMP_RS04095 at 776.031 kb on - strand, within MMP_RS04095 at 776.070 kb on - strand, within MMP_RS04095 at 776.071 kb on + strand, within MMP_RS04095 at 776.073 kb on - strand, within MMP_RS04095 at 776.114 kb on + strand, within MMP_RS04095 at 776.140 kb on + strand, within MMP_RS04095 at 776.217 kb on - strand, within MMP_RS04095 at 776.218 kb on + strand, within MMP_RS04095 at 776.218 kb on + strand, within MMP_RS04095 at 776.239 kb on - strand, within MMP_RS04095 at 776.260 kb on - strand, within MMP_RS04095 at 776.290 kb on - strand, within MMP_RS04095 at 776.296 kb on - strand, within MMP_RS04095 at 776.297 kb on + strand, within MMP_RS04095
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 773,208 - +1.1 773,251 + -0.4 773,386 + +0.3 773,630 + -0.2 773,633 - -1.6 773,633 - -0.1 773,635 - +0.1 773,636 + -1.2 773,636 + -1.8 773,716 - +1.3 773,717 + -0.9 773,717 + -2.2 773,744 + +0.1 773,759 - -1.0 773,759 - -0.7 773,762 - +0.0 773,769 - -0.2 773,778 - -1.4 773,778 - +2.8 773,778 - -1.7 773,839 + -0.7 774,035 - MMP_RS04085 0.16 +0.0 774,096 - MMP_RS04085 0.20 -1.7 774,097 + MMP_RS04085 0.20 +1.7 774,114 - MMP_RS04085 0.21 +0.5 774,114 - MMP_RS04085 0.21 +0.4 774,115 + MMP_RS04085 0.21 -0.7 774,187 - MMP_RS04085 0.26 -0.7 774,224 - MMP_RS04085 0.28 +0.4 774,255 + MMP_RS04085 0.30 +0.7 774,277 - MMP_RS04085 0.32 +0.5 774,277 - MMP_RS04085 0.32 +0.4 774,283 - MMP_RS04085 0.32 -0.1 774,283 - MMP_RS04085 0.32 +1.3 774,284 + MMP_RS04085 0.32 -0.7 774,284 + MMP_RS04085 0.32 -1.7 774,295 - MMP_RS04085 0.33 -0.2 774,296 + MMP_RS04085 0.33 -1.2 774,329 - MMP_RS04085 0.35 -0.6 774,563 - MMP_RS04085 0.51 +0.4 774,582 - MMP_RS04085 0.52 +0.6 774,615 - MMP_RS04085 0.54 +0.6 774,655 - MMP_RS04085 0.57 -1.2 774,732 - MMP_RS04085 0.62 +1.1 774,857 - MMP_RS04085 0.71 +0.6 774,887 - MMP_RS04085 0.73 -0.7 774,890 + MMP_RS04085 0.73 -0.1 774,918 - MMP_RS04085 0.75 +1.3 774,918 - MMP_RS04085 0.75 +1.9 774,918 - MMP_RS04085 0.75 +0.9 774,918 - MMP_RS04085 0.75 -0.5 774,918 - MMP_RS04085 0.75 +0.7 774,918 - MMP_RS04085 0.75 +1.6 774,919 + MMP_RS04085 0.75 +0.3 774,919 + MMP_RS04085 0.75 +0.2 774,919 + MMP_RS04085 0.75 +0.3 774,920 - MMP_RS04085 0.75 +0.1 774,920 - MMP_RS04085 0.75 -0.7 774,959 - MMP_RS04085 0.77 -0.7 774,967 - MMP_RS04085 0.78 +0.7 774,973 + MMP_RS04085 0.78 +0.9 774,975 + MMP_RS04085 0.78 +0.3 774,998 - MMP_RS04085 0.80 -0.4 775,175 + +1.9 775,196 - +0.0 775,196 - -0.7 775,201 - +0.8 775,286 - +1.1 775,369 - MMP_RS04090 0.23 -3.8 775,448 - MMP_RS04090 0.42 -1.5 775,449 + MMP_RS04090 0.42 -4.4 775,600 + MMP_RS04090 0.79 +1.9 775,605 - MMP_RS04090 0.80 -1.7 775,670 - +0.1 775,684 - +1.0 775,685 + -1.4 775,689 - +1.1 775,717 + -1.2 775,757 - +0.4 775,757 - +0.9 775,761 - -0.1 775,774 + +0.5 775,785 - +1.0 775,786 + -1.5 775,802 + +0.3 776,027 - MMP_RS04095 0.31 +0.2 776,027 - MMP_RS04095 0.31 -0.1 776,028 + MMP_RS04095 0.31 -3.4 776,031 - MMP_RS04095 0.31 +0.5 776,070 - MMP_RS04095 0.36 +2.5 776,071 + MMP_RS04095 0.36 +0.1 776,073 - MMP_RS04095 0.36 -0.8 776,114 + MMP_RS04095 0.42 -0.3 776,140 + MMP_RS04095 0.45 -0.2 776,217 - MMP_RS04095 0.55 +0.4 776,218 + MMP_RS04095 0.55 +0.7 776,218 + MMP_RS04095 0.55 -0.1 776,239 - MMP_RS04095 0.58 +0.2 776,260 - MMP_RS04095 0.60 +0.3 776,290 - MMP_RS04095 0.64 -0.9 776,296 - MMP_RS04095 0.65 -0.7 776,297 + MMP_RS04095 0.65 -0.0
Or see this region's nucleotide sequence