Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03955

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03945 and MMP_RS03950 are separated by 2 nucleotidesMMP_RS03950 and MMP_RS03955 are separated by 19 nucleotidesMMP_RS03955 and MMP_RS03960 are separated by 196 nucleotidesMMP_RS03960 and MMP_RS03965 are separated by 168 nucleotides MMP_RS03945: MMP_RS03945 - nucleoside triphosphate pyrophosphohydrolase, at 749,567 to 749,875 _RS03945 MMP_RS03950: MMP_RS03950 - HNH endonuclease, at 749,878 to 750,849 _RS03950 MMP_RS03955: MMP_RS03955 - DUF3578 domain-containing protein, at 750,869 to 752,053 _RS03955 MMP_RS03960: MMP_RS03960 - hypothetical protein, at 752,250 to 752,480 _RS03960 MMP_RS03965: MMP_RS03965 - hypothetical protein, at 752,649 to 753,023 _RS03965 Position (kb) 750 751 752 753Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 749.876 kb on + strandat 749.876 kb on + strandat 749.908 kb on + strandat 749.913 kb on + strandat 749.913 kb on + strandat 749.935 kb on - strandat 749.936 kb on + strandat 750.102 kb on + strand, within MMP_RS03950at 750.105 kb on - strand, within MMP_RS03950at 750.193 kb on + strand, within MMP_RS03950at 750.200 kb on + strand, within MMP_RS03950at 750.269 kb on + strand, within MMP_RS03950at 750.582 kb on + strand, within MMP_RS03950at 750.584 kb on - strand, within MMP_RS03950at 750.608 kb on - strand, within MMP_RS03950at 750.662 kb on - strand, within MMP_RS03950at 750.694 kb on - strand, within MMP_RS03950at 750.695 kb on + strand, within MMP_RS03950at 750.816 kb on - strandat 750.883 kb on + strandat 750.883 kb on + strandat 750.930 kb on + strandat 750.937 kb on + strandat 750.981 kb on - strandat 750.981 kb on - strandat 750.982 kb on + strandat 750.983 kb on - strandat 750.983 kb on - strandat 750.983 kb on - strandat 750.990 kb on - strand, within MMP_RS03955at 750.991 kb on + strand, within MMP_RS03955at 751.083 kb on - strand, within MMP_RS03955at 751.083 kb on - strand, within MMP_RS03955at 751.084 kb on + strand, within MMP_RS03955at 751.084 kb on + strand, within MMP_RS03955at 751.084 kb on + strand, within MMP_RS03955at 751.161 kb on + strand, within MMP_RS03955at 751.205 kb on - strand, within MMP_RS03955at 751.218 kb on - strand, within MMP_RS03955at 751.253 kb on + strand, within MMP_RS03955at 751.253 kb on + strand, within MMP_RS03955at 751.427 kb on - strand, within MMP_RS03955at 751.427 kb on - strand, within MMP_RS03955at 751.427 kb on - strand, within MMP_RS03955at 751.670 kb on + strand, within MMP_RS03955at 751.761 kb on - strand, within MMP_RS03955at 751.799 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.842 kb on + strand, within MMP_RS03955at 751.842 kb on + strand, within MMP_RS03955at 751.953 kb on + strandat 752.006 kb on + strandat 752.006 kb on + strandat 752.007 kb on - strandat 752.016 kb on + strandat 752.039 kb on - strandat 752.039 kb on - strandat 752.039 kb on - strandat 752.071 kb on + strandat 752.090 kb on - strandat 752.098 kb on - strandat 752.099 kb on + strandat 752.101 kb on - strandat 752.101 kb on - strandat 752.102 kb on + strandat 752.169 kb on + strandat 752.171 kb on - strandat 752.172 kb on + strandat 752.178 kb on + strandat 752.236 kb on - strandat 752.376 kb on - strand, within MMP_RS03960at 752.526 kb on + strandat 752.528 kb on - strandat 752.531 kb on - strandat 752.534 kb on - strandat 752.535 kb on + strandat 752.776 kb on - strand, within MMP_RS03965at 752.987 kb on - strandat 752.987 kb on - strandat 752.998 kb on + strandat 753.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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749,876 + +0.8
749,876 + -0.3
749,908 + +0.2
749,913 + +2.6
749,913 + +1.5
749,935 - +1.2
749,936 + +1.1
750,102 + MMP_RS03950 0.23 -0.2
750,105 - MMP_RS03950 0.23 +0.8
750,193 + MMP_RS03950 0.32 -0.8
750,200 + MMP_RS03950 0.33 -0.4
750,269 + MMP_RS03950 0.40 +0.5
750,582 + MMP_RS03950 0.72 +0.3
750,584 - MMP_RS03950 0.73 -0.5
750,608 - MMP_RS03950 0.75 +1.3
750,662 - MMP_RS03950 0.81 +0.3
750,694 - MMP_RS03950 0.84 -1.6
750,695 + MMP_RS03950 0.84 -0.1
750,816 - -1.2
750,883 + +0.6
750,883 + -0.8
750,930 + +1.0
750,937 + -1.3
750,981 - -0.6
750,981 - -1.5
750,982 + +2.2
750,983 - -0.3
750,983 - -0.5
750,983 - +0.2
750,990 - MMP_RS03955 0.10 -2.2
750,991 + MMP_RS03955 0.10 +3.0
751,083 - MMP_RS03955 0.18 -0.3
751,083 - MMP_RS03955 0.18 +5.3
751,084 + MMP_RS03955 0.18 -0.9
751,084 + MMP_RS03955 0.18 +0.0
751,084 + MMP_RS03955 0.18 -0.8
751,161 + MMP_RS03955 0.25 -0.4
751,205 - MMP_RS03955 0.28 +3.9
751,218 - MMP_RS03955 0.29 -0.7
751,253 + MMP_RS03955 0.32 +1.3
751,253 + MMP_RS03955 0.32 -0.6
751,427 - MMP_RS03955 0.47 +0.2
751,427 - MMP_RS03955 0.47 +0.1
751,427 - MMP_RS03955 0.47 -1.0
751,670 + MMP_RS03955 0.68 +0.7
751,761 - MMP_RS03955 0.75 +1.0
751,799 + MMP_RS03955 0.78 -0.2
751,801 + MMP_RS03955 0.79 +0.7
751,801 + MMP_RS03955 0.79 +1.7
751,801 + MMP_RS03955 0.79 +1.2
751,801 + MMP_RS03955 0.79 +1.7
751,842 + MMP_RS03955 0.82 +0.4
751,842 + MMP_RS03955 0.82 -0.4
751,953 + -0.8
752,006 + +3.7
752,006 + +1.4
752,007 - +0.7
752,016 + -0.4
752,039 - -0.7
752,039 - -0.1
752,039 - +0.1
752,071 + +1.3
752,090 - +0.7
752,098 - -0.3
752,099 + -1.8
752,101 - +0.3
752,101 - -1.2
752,102 + -1.2
752,169 + -1.0
752,171 - -0.4
752,172 + +0.4
752,178 + +1.7
752,236 - -1.3
752,376 - MMP_RS03960 0.55 +0.3
752,526 + -2.9
752,528 - -0.3
752,531 - -3.1
752,534 - -3.7
752,535 + -1.8
752,776 - MMP_RS03965 0.34 +0.8
752,987 - -0.8
752,987 - +0.1
752,998 + +0.2
753,012 - -1.5

Or see this region's nucleotide sequence