Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03850 and MMP_RS03855 are separated by 24 nucleotides MMP_RS03855 and MMP_RS03860 are separated by 81 nucleotides MMP_RS03860 and MMP_RS03865 are separated by 937 nucleotides
MMP_RS03850: MMP_RS03850 - PRC-barrel domain-containing protein, at 729,123 to 729,377
_RS03850
MMP_RS03855: MMP_RS03855 - aspartate dehydrogenase, at 729,402 to 730,205
_RS03855
MMP_RS03860: MMP_RS03860 - hypothetical protein, at 730,287 to 731,216
_RS03860
MMP_RS03865: MMP_RS03865 - aspartate/glutamate racemase family protein, at 732,154 to 732,858
_RS03865
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 729.384 kb on + strand at 729.387 kb on - strand at 729.388 kb on + strand at 729.419 kb on + strand at 729.755 kb on + strand at 729.760 kb on - strand at 729.986 kb on + strand at 730.115 kb on - strand at 730.271 kb on + strand at 730.288 kb on - strand at 730.288 kb on - strand at 730.288 kb on - strand at 730.289 kb on + strand at 730.343 kb on - strand at 730.393 kb on + strand, within MMP_RS03860 at 730.429 kb on + strand, within MMP_RS03860 at 730.481 kb on - strand, within MMP_RS03860 at 730.645 kb on + strand, within MMP_RS03860 at 730.845 kb on - strand, within MMP_RS03860 at 730.845 kb on - strand, within MMP_RS03860 at 730.849 kb on - strand, within MMP_RS03860 at 730.849 kb on - strand, within MMP_RS03860 at 730.886 kb on - strand, within MMP_RS03860 at 730.895 kb on - strand, within MMP_RS03860 at 730.935 kb on - strand, within MMP_RS03860 at 730.935 kb on - strand, within MMP_RS03860 at 730.935 kb on - strand, within MMP_RS03860 at 730.936 kb on + strand, within MMP_RS03860 at 730.968 kb on - strand, within MMP_RS03860 at 730.973 kb on - strand, within MMP_RS03860 at 730.974 kb on + strand, within MMP_RS03860 at 730.974 kb on + strand, within MMP_RS03860 at 731.002 kb on + strand, within MMP_RS03860 at 731.036 kb on - strand, within MMP_RS03860 at 731.081 kb on - strand, within MMP_RS03860 at 731.082 kb on + strand, within MMP_RS03860 at 731.132 kb on - strand at 731.132 kb on - strand at 731.268 kb on - strand at 731.268 kb on - strand at 731.270 kb on - strand at 731.271 kb on + strand at 731.271 kb on + strand at 731.272 kb on - strand at 731.272 kb on - strand at 731.272 kb on - strand at 731.272 kb on - strand at 731.273 kb on + strand at 731.273 kb on + strand at 731.273 kb on + strand at 731.275 kb on - strand at 731.275 kb on - strand at 731.275 kb on - strand at 731.275 kb on - strand at 731.276 kb on + strand at 731.276 kb on + strand at 731.276 kb on + strand at 731.276 kb on + strand at 731.276 kb on + strand at 731.280 kb on + strand at 731.282 kb on - strand at 731.283 kb on + strand at 731.416 kb on - strand at 731.416 kb on - strand at 731.431 kb on - strand at 731.432 kb on + strand at 731.432 kb on + strand at 731.456 kb on + strand at 731.456 kb on + strand at 731.459 kb on + strand at 731.459 kb on + strand at 731.471 kb on - strand at 731.472 kb on + strand at 731.472 kb on + strand at 731.490 kb on + strand at 731.493 kb on - strand at 731.519 kb on - strand at 731.520 kb on + strand at 731.546 kb on - strand at 731.608 kb on - strand at 731.621 kb on - strand at 731.626 kb on + strand at 731.700 kb on + strand at 731.727 kb on - strand at 731.841 kb on - strand at 732.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 729,384 + -1.4 729,387 - -1.1 729,388 + -1.0 729,419 + -3.3 729,755 + -2.9 729,760 - -0.8 729,986 + -1.5 730,115 - -2.3 730,271 + +0.8 730,288 - +3.0 730,288 - -0.9 730,288 - +1.9 730,289 + -1.0 730,343 - +0.3 730,393 + MMP_RS03860 0.11 -0.8 730,429 + MMP_RS03860 0.15 +1.7 730,481 - MMP_RS03860 0.21 -0.0 730,645 + MMP_RS03860 0.38 +0.8 730,845 - MMP_RS03860 0.60 +6.4 730,845 - MMP_RS03860 0.60 -0.3 730,849 - MMP_RS03860 0.60 -1.1 730,849 - MMP_RS03860 0.60 +1.3 730,886 - MMP_RS03860 0.64 +0.6 730,895 - MMP_RS03860 0.65 +0.1 730,935 - MMP_RS03860 0.70 -1.2 730,935 - MMP_RS03860 0.70 -1.5 730,935 - MMP_RS03860 0.70 +0.2 730,936 + MMP_RS03860 0.70 +1.9 730,968 - MMP_RS03860 0.73 -0.0 730,973 - MMP_RS03860 0.74 +1.5 730,974 + MMP_RS03860 0.74 -0.7 730,974 + MMP_RS03860 0.74 +1.1 731,002 + MMP_RS03860 0.77 +0.9 731,036 - MMP_RS03860 0.81 -0.1 731,081 - MMP_RS03860 0.85 +2.4 731,082 + MMP_RS03860 0.85 +1.6 731,132 - -0.3 731,132 - +1.2 731,268 - +0.6 731,268 - +1.0 731,270 - +0.6 731,271 + +0.2 731,271 + +0.8 731,272 - -0.2 731,272 - +2.7 731,272 - -1.9 731,272 - -0.2 731,273 + +1.5 731,273 + +2.3 731,273 + -0.6 731,275 - +0.1 731,275 - +2.1 731,275 - -1.0 731,275 - +1.7 731,276 + -0.2 731,276 + +0.2 731,276 + -0.7 731,276 + -0.1 731,276 + +1.4 731,280 + -1.1 731,282 - +0.2 731,283 + +0.6 731,416 - +0.5 731,416 - +1.6 731,431 - -1.0 731,432 + +0.4 731,432 + +2.5 731,456 + +0.9 731,456 + +0.9 731,459 + -0.2 731,459 + +0.8 731,471 - +2.7 731,472 + +0.7 731,472 + -1.1 731,490 + +1.7 731,493 - +0.7 731,519 - -1.1 731,520 + +1.8 731,546 - +0.7 731,608 - +0.0 731,621 - -0.2 731,626 + -0.2 731,700 + -1.4 731,727 - -0.2 731,841 - +0.3 732,063 - -0.5
Or see this region's nucleotide sequence