Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03830 and MMP_RS03835 are separated by 106 nucleotides MMP_RS03835 and MMP_RS03840 are separated by 136 nucleotides MMP_RS03840 and MMP_RS03845 are separated by 74 nucleotides
MMP_RS03830: MMP_RS03830 - exodeoxyribonuclease VII large subunit, at 724,668 to 725,891
_RS03830
MMP_RS03835: MMP_RS03835 - MATE family efflux transporter, at 725,998 to 727,350
_RS03835
MMP_RS03840: MMP_RS03840 - hypothetical protein, at 727,487 to 727,804
_RS03840
MMP_RS03845: MMP_RS03845 - DNA adenine methylase, at 727,879 to 728,799
_RS03845
Position (kb) 725
726
727
728 Strain fitness (log2 ratio) -2
-1
0
1
2 at 725.072 kb on + strand, within MMP_RS03830 at 725.080 kb on - strand, within MMP_RS03830 at 725.081 kb on + strand, within MMP_RS03830 at 725.081 kb on + strand, within MMP_RS03830 at 725.081 kb on + strand, within MMP_RS03830 at 725.083 kb on + strand, within MMP_RS03830 at 725.122 kb on + strand, within MMP_RS03830 at 725.545 kb on + strand, within MMP_RS03830 at 725.576 kb on - strand, within MMP_RS03830 at 725.635 kb on + strand, within MMP_RS03830 at 725.938 kb on - strand at 725.952 kb on - strand at 725.952 kb on - strand at 725.954 kb on - strand at 726.018 kb on + strand at 726.051 kb on + strand at 726.057 kb on - strand at 726.060 kb on - strand at 726.064 kb on + strand at 726.101 kb on + strand at 726.119 kb on - strand at 726.122 kb on + strand at 726.135 kb on - strand, within MMP_RS03835 at 726.136 kb on + strand, within MMP_RS03835 at 726.376 kb on - strand, within MMP_RS03835 at 726.446 kb on - strand, within MMP_RS03835 at 726.485 kb on - strand, within MMP_RS03835 at 726.494 kb on - strand, within MMP_RS03835 at 726.513 kb on + strand, within MMP_RS03835 at 726.719 kb on + strand, within MMP_RS03835 at 726.725 kb on + strand, within MMP_RS03835 at 726.956 kb on - strand, within MMP_RS03835 at 726.957 kb on + strand, within MMP_RS03835 at 726.985 kb on + strand, within MMP_RS03835 at 727.027 kb on + strand, within MMP_RS03835 at 727.045 kb on - strand, within MMP_RS03835 at 727.045 kb on - strand, within MMP_RS03835 at 727.052 kb on - strand, within MMP_RS03835 at 727.052 kb on - strand, within MMP_RS03835 at 727.052 kb on - strand, within MMP_RS03835 at 727.053 kb on + strand, within MMP_RS03835 at 727.053 kb on + strand, within MMP_RS03835 at 727.058 kb on + strand, within MMP_RS03835 at 727.070 kb on + strand, within MMP_RS03835 at 727.120 kb on - strand, within MMP_RS03835 at 727.147 kb on + strand, within MMP_RS03835 at 727.161 kb on - strand, within MMP_RS03835 at 727.234 kb on - strand at 727.263 kb on - strand at 727.266 kb on - strand at 727.314 kb on - strand at 727.314 kb on - strand at 727.315 kb on + strand at 727.350 kb on - strand at 727.382 kb on + strand at 727.391 kb on - strand at 727.429 kb on - strand at 727.429 kb on - strand at 727.429 kb on - strand at 727.430 kb on + strand at 727.431 kb on - strand at 727.431 kb on - strand at 727.431 kb on - strand at 727.431 kb on - strand at 727.431 kb on - strand at 727.432 kb on + strand at 727.432 kb on + strand at 727.432 kb on + strand at 727.433 kb on - strand at 727.433 kb on - strand at 727.433 kb on - strand at 727.433 kb on - strand at 727.433 kb on - strand at 727.434 kb on + strand at 727.434 kb on + strand at 727.434 kb on + strand at 727.434 kb on + strand at 727.468 kb on - strand at 727.469 kb on + strand at 727.469 kb on + strand at 727.469 kb on + strand at 727.484 kb on - strand at 727.485 kb on + strand at 727.485 kb on + strand at 727.485 kb on + strand at 727.485 kb on + strand at 727.486 kb on - strand at 727.486 kb on - strand at 727.486 kb on - strand at 727.497 kb on + strand at 727.528 kb on + strand, within MMP_RS03840 at 727.564 kb on - strand, within MMP_RS03840 at 727.656 kb on - strand, within MMP_RS03840 at 727.781 kb on + strand at 727.782 kb on - strand at 727.810 kb on - strand at 727.848 kb on + strand at 727.873 kb on - strand at 727.878 kb on - strand at 727.879 kb on + strand at 728.024 kb on + strand, within MMP_RS03845 at 728.075 kb on - strand, within MMP_RS03845 at 728.198 kb on + strand, within MMP_RS03845 at 728.219 kb on + strand, within MMP_RS03845 at 728.323 kb on + strand, within MMP_RS03845
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 725,072 + MMP_RS03830 0.33 +0.7 725,080 - MMP_RS03830 0.34 +0.9 725,081 + MMP_RS03830 0.34 -0.2 725,081 + MMP_RS03830 0.34 +1.1 725,081 + MMP_RS03830 0.34 +0.7 725,083 + MMP_RS03830 0.34 +0.4 725,122 + MMP_RS03830 0.37 -2.0 725,545 + MMP_RS03830 0.72 +0.1 725,576 - MMP_RS03830 0.74 -0.3 725,635 + MMP_RS03830 0.79 +0.1 725,938 - +0.0 725,952 - -0.3 725,952 - +1.5 725,954 - +1.5 726,018 + +1.0 726,051 + +0.6 726,057 - -1.5 726,060 - -0.3 726,064 + +0.6 726,101 + -0.2 726,119 - +0.5 726,122 + +0.5 726,135 - MMP_RS03835 0.10 -1.4 726,136 + MMP_RS03835 0.10 +1.5 726,376 - MMP_RS03835 0.28 -1.0 726,446 - MMP_RS03835 0.33 +0.8 726,485 - MMP_RS03835 0.36 -1.3 726,494 - MMP_RS03835 0.37 +1.6 726,513 + MMP_RS03835 0.38 -0.1 726,719 + MMP_RS03835 0.53 -1.1 726,725 + MMP_RS03835 0.54 +0.0 726,956 - MMP_RS03835 0.71 -0.4 726,957 + MMP_RS03835 0.71 -1.0 726,985 + MMP_RS03835 0.73 +0.0 727,027 + MMP_RS03835 0.76 -0.5 727,045 - MMP_RS03835 0.77 -2.3 727,045 - MMP_RS03835 0.77 -1.3 727,052 - MMP_RS03835 0.78 +2.2 727,052 - MMP_RS03835 0.78 -1.0 727,052 - MMP_RS03835 0.78 -0.2 727,053 + MMP_RS03835 0.78 -0.6 727,053 + MMP_RS03835 0.78 -1.9 727,058 + MMP_RS03835 0.78 +0.7 727,070 + MMP_RS03835 0.79 -0.0 727,120 - MMP_RS03835 0.83 +0.8 727,147 + MMP_RS03835 0.85 +0.3 727,161 - MMP_RS03835 0.86 +0.4 727,234 - -0.2 727,263 - -0.6 727,266 - +0.2 727,314 - -0.9 727,314 - -0.3 727,315 + +0.1 727,350 - +0.4 727,382 + -0.3 727,391 - -0.0 727,429 - +0.1 727,429 - -1.7 727,429 - +0.6 727,430 + +1.5 727,431 - -0.3 727,431 - -1.2 727,431 - +1.1 727,431 - +0.2 727,431 - -0.2 727,432 + -1.0 727,432 + -0.3 727,432 + +0.4 727,433 - -1.0 727,433 - -0.5 727,433 - -0.6 727,433 - -0.5 727,433 - -0.2 727,434 + -0.2 727,434 + -1.0 727,434 + -1.6 727,434 + -0.9 727,468 - +0.2 727,469 + +2.0 727,469 + +0.9 727,469 + -0.3 727,484 - +0.0 727,485 + -0.6 727,485 + +0.4 727,485 + +0.1 727,485 + -0.0 727,486 - -0.0 727,486 - -0.3 727,486 - -1.1 727,497 + +0.6 727,528 + MMP_RS03840 0.13 +0.1 727,564 - MMP_RS03840 0.24 -0.9 727,656 - MMP_RS03840 0.53 +2.1 727,781 + +0.1 727,782 - +0.7 727,810 - -0.1 727,848 + +0.2 727,873 - +0.2 727,878 - +1.5 727,879 + +0.7 728,024 + MMP_RS03845 0.16 +0.9 728,075 - MMP_RS03845 0.21 -0.0 728,198 + MMP_RS03845 0.35 +0.4 728,219 + MMP_RS03845 0.37 -2.2 728,323 + MMP_RS03845 0.48 -0.3
Or see this region's nucleotide sequence