Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03725

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03720 and MMP_RS03725 are separated by 9 nucleotidesMMP_RS03725 and MMP_RS03730 are separated by 85 nucleotides MMP_RS03720: MMP_RS03720 - cation-transporting P-type ATPase, at 701,140 to 703,920 _RS03720 MMP_RS03725: MMP_RS03725 - magnesium/cobalt transporter CorA, at 703,930 to 704,988 _RS03725 MMP_RS03730: MMP_RS03730 - ABC transporter substrate-binding protein, at 705,074 to 705,820 _RS03730 Position (kb) 703 704 705Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 703.011 kb on - strand, within MMP_RS03720at 703.179 kb on - strand, within MMP_RS03720at 703.255 kb on + strand, within MMP_RS03720at 703.255 kb on + strand, within MMP_RS03720at 703.310 kb on + strand, within MMP_RS03720at 703.417 kb on + strand, within MMP_RS03720at 703.419 kb on + strand, within MMP_RS03720at 703.604 kb on + strand, within MMP_RS03720at 703.652 kb on + strandat 703.861 kb on - strandat 703.863 kb on - strandat 703.926 kb on - strandat 703.990 kb on - strandat 703.990 kb on - strandat 704.202 kb on + strand, within MMP_RS03725at 704.202 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.248 kb on + strand, within MMP_RS03725at 704.252 kb on + strand, within MMP_RS03725at 704.252 kb on + strand, within MMP_RS03725at 704.292 kb on + strand, within MMP_RS03725at 704.364 kb on + strand, within MMP_RS03725at 704.364 kb on + strand, within MMP_RS03725at 704.412 kb on - strand, within MMP_RS03725at 704.434 kb on - strand, within MMP_RS03725at 704.434 kb on - strand, within MMP_RS03725at 704.516 kb on + strand, within MMP_RS03725at 704.632 kb on + strand, within MMP_RS03725at 704.681 kb on + strand, within MMP_RS03725at 704.696 kb on + strand, within MMP_RS03725at 704.715 kb on + strand, within MMP_RS03725at 704.791 kb on + strand, within MMP_RS03725at 704.863 kb on - strand, within MMP_RS03725at 704.942 kb on - strandat 704.986 kb on - strandat 704.999 kb on + strandat 705.017 kb on - strandat 705.041 kb on + strandat 705.041 kb on + strandat 705.046 kb on + strandat 705.048 kb on - strandat 705.051 kb on + strandat 705.099 kb on - strandat 705.177 kb on - strand, within MMP_RS03730at 705.178 kb on + strand, within MMP_RS03730at 705.178 kb on + strand, within MMP_RS03730at 705.179 kb on - strand, within MMP_RS03730at 705.179 kb on - strand, within MMP_RS03730at 705.180 kb on + strand, within MMP_RS03730at 705.185 kb on - strand, within MMP_RS03730at 705.185 kb on - strand, within MMP_RS03730at 705.185 kb on - strand, within MMP_RS03730at 705.185 kb on - strand, within MMP_RS03730at 705.237 kb on - strand, within MMP_RS03730at 705.237 kb on - strand, within MMP_RS03730at 705.272 kb on + strand, within MMP_RS03730at 705.306 kb on + strand, within MMP_RS03730at 705.315 kb on + strand, within MMP_RS03730at 705.407 kb on - strand, within MMP_RS03730at 705.419 kb on - strand, within MMP_RS03730at 705.420 kb on + strand, within MMP_RS03730at 705.560 kb on - strand, within MMP_RS03730at 705.565 kb on - strand, within MMP_RS03730at 705.626 kb on - strand, within MMP_RS03730at 705.642 kb on + strand, within MMP_RS03730at 705.642 kb on + strand, within MMP_RS03730at 705.682 kb on - strand, within MMP_RS03730at 705.689 kb on + strand, within MMP_RS03730at 705.732 kb on - strand, within MMP_RS03730at 705.739 kb on - strand, within MMP_RS03730at 705.745 kb on + strand, within MMP_RS03730at 705.745 kb on + strand, within MMP_RS03730at 705.745 kb on + strand, within MMP_RS03730at 705.745 kb on + strand, within MMP_RS03730at 705.745 kb on + strand, within MMP_RS03730at 705.745 kb on + strand, within MMP_RS03730at 705.763 kb on - strandat 705.763 kb on - strandat 705.767 kb on - strandat 705.767 kb on - strandat 705.767 kb on - strandat 705.767 kb on - strandat 705.767 kb on - strandat 705.768 kb on + strandat 705.768 kb on + strandat 705.798 kb on - strandat 705.876 kb on - strandat 705.876 kb on - strandat 705.876 kb on - strandat 705.877 kb on + strandat 705.881 kb on + strandat 705.881 kb on + strandat 705.886 kb on - strandat 705.907 kb on + strandat 705.910 kb on + strandat 705.911 kb on - strandat 705.911 kb on - strandat 705.911 kb on - strandat 705.912 kb on + strandat 705.912 kb on + strandat 705.912 kb on + strandat 705.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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703,011 - MMP_RS03720 0.67 -1.3
703,179 - MMP_RS03720 0.73 +0.7
703,255 + MMP_RS03720 0.76 -1.3
703,255 + MMP_RS03720 0.76 +0.5
703,310 + MMP_RS03720 0.78 -0.5
703,417 + MMP_RS03720 0.82 +3.1
703,419 + MMP_RS03720 0.82 -0.7
703,604 + MMP_RS03720 0.89 -1.5
703,652 + -1.9
703,861 - +0.2
703,863 - -1.4
703,926 - -0.2
703,990 - -1.3
703,990 - -0.0
704,202 + MMP_RS03725 0.26 -1.3
704,202 + MMP_RS03725 0.26 -0.6
704,248 + MMP_RS03725 0.30 +2.0
704,248 + MMP_RS03725 0.30 +1.5
704,248 + MMP_RS03725 0.30 +2.1
704,248 + MMP_RS03725 0.30 -0.1
704,248 + MMP_RS03725 0.30 +1.6
704,252 + MMP_RS03725 0.30 -2.0
704,252 + MMP_RS03725 0.30 -0.4
704,292 + MMP_RS03725 0.34 +0.8
704,364 + MMP_RS03725 0.41 +0.1
704,364 + MMP_RS03725 0.41 +0.9
704,412 - MMP_RS03725 0.46 +0.4
704,434 - MMP_RS03725 0.48 +1.0
704,434 - MMP_RS03725 0.48 +4.0
704,516 + MMP_RS03725 0.55 -0.6
704,632 + MMP_RS03725 0.66 +3.1
704,681 + MMP_RS03725 0.71 -0.9
704,696 + MMP_RS03725 0.72 +1.6
704,715 + MMP_RS03725 0.74 -0.6
704,791 + MMP_RS03725 0.81 -0.9
704,863 - MMP_RS03725 0.88 +0.5
704,942 - -0.3
704,986 - +0.9
704,999 + -0.2
705,017 - +0.0
705,041 + +1.0
705,041 + -0.8
705,046 + -1.9
705,048 - +3.0
705,051 + -1.6
705,099 - +0.8
705,177 - MMP_RS03730 0.14 -1.6
705,178 + MMP_RS03730 0.14 +0.7
705,178 + MMP_RS03730 0.14 +0.8
705,179 - MMP_RS03730 0.14 +1.1
705,179 - MMP_RS03730 0.14 +0.6
705,180 + MMP_RS03730 0.14 +3.1
705,185 - MMP_RS03730 0.15 +2.8
705,185 - MMP_RS03730 0.15 +0.2
705,185 - MMP_RS03730 0.15 +0.2
705,185 - MMP_RS03730 0.15 +0.2
705,237 - MMP_RS03730 0.22 -0.4
705,237 - MMP_RS03730 0.22 +0.6
705,272 + MMP_RS03730 0.27 -0.4
705,306 + MMP_RS03730 0.31 +0.5
705,315 + MMP_RS03730 0.32 -0.1
705,407 - MMP_RS03730 0.45 -0.2
705,419 - MMP_RS03730 0.46 +3.2
705,420 + MMP_RS03730 0.46 +0.4
705,560 - MMP_RS03730 0.65 -1.3
705,565 - MMP_RS03730 0.66 +0.1
705,626 - MMP_RS03730 0.74 -0.3
705,642 + MMP_RS03730 0.76 +0.0
705,642 + MMP_RS03730 0.76 +1.0
705,682 - MMP_RS03730 0.81 -0.6
705,689 + MMP_RS03730 0.82 +0.1
705,732 - MMP_RS03730 0.88 +1.0
705,739 - MMP_RS03730 0.89 -0.4
705,745 + MMP_RS03730 0.90 +0.6
705,745 + MMP_RS03730 0.90 +0.5
705,745 + MMP_RS03730 0.90 -1.0
705,745 + MMP_RS03730 0.90 -0.6
705,745 + MMP_RS03730 0.90 -0.7
705,745 + MMP_RS03730 0.90 -0.3
705,763 - -2.0
705,763 - +0.9
705,767 - -0.1
705,767 - +0.3
705,767 - +0.9
705,767 - +0.1
705,767 - +1.5
705,768 + +0.0
705,768 + -1.4
705,798 - +0.1
705,876 - +0.3
705,876 - +0.2
705,876 - -0.3
705,877 + +0.2
705,881 + -0.0
705,881 + +0.8
705,886 - -0.3
705,907 + +0.6
705,910 + +1.0
705,911 - +0.2
705,911 - -0.7
705,911 - +1.7
705,912 + +0.3
705,912 + +0.5
705,912 + +1.1
705,913 - +0.6

Or see this region's nucleotide sequence