Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03650 and MMP_RS03655 are separated by 27 nucleotides MMP_RS03655 and MMP_RS03660 are separated by 69 nucleotides
MMP_RS03650: MMP_RS03650 - leucine--tRNA ligase, at 686,587 to 689,454
_RS03650
MMP_RS03655: MMP_RS03655 - DUF1894 domain-containing protein, at 689,482 to 689,799
_RS03655
MMP_RS03660: MMP_RS03660 - MATE family efflux transporter, at 689,869 to 691,212
_RS03660
Position (kb) 689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 689.443 kb on - strand at 689.501 kb on + strand at 689.600 kb on - strand, within MMP_RS03655 at 689.613 kb on + strand, within MMP_RS03655 at 689.660 kb on + strand, within MMP_RS03655 at 689.660 kb on + strand, within MMP_RS03655 at 689.664 kb on + strand, within MMP_RS03655 at 689.706 kb on - strand, within MMP_RS03655 at 689.707 kb on + strand, within MMP_RS03655 at 689.707 kb on + strand, within MMP_RS03655 at 689.707 kb on + strand, within MMP_RS03655 at 689.827 kb on + strand at 689.871 kb on + strand at 689.878 kb on - strand at 689.879 kb on + strand at 689.879 kb on + strand at 690.172 kb on - strand, within MMP_RS03660 at 690.209 kb on + strand, within MMP_RS03660 at 690.215 kb on + strand, within MMP_RS03660 at 690.217 kb on + strand, within MMP_RS03660 at 690.217 kb on + strand, within MMP_RS03660 at 690.304 kb on + strand, within MMP_RS03660 at 690.306 kb on + strand, within MMP_RS03660 at 690.376 kb on + strand, within MMP_RS03660 at 690.413 kb on - strand, within MMP_RS03660 at 690.413 kb on - strand, within MMP_RS03660 at 690.414 kb on + strand, within MMP_RS03660 at 690.416 kb on + strand, within MMP_RS03660 at 690.457 kb on - strand, within MMP_RS03660 at 690.457 kb on - strand, within MMP_RS03660 at 690.457 kb on - strand, within MMP_RS03660 at 690.494 kb on + strand, within MMP_RS03660 at 690.577 kb on - strand, within MMP_RS03660 at 690.580 kb on - strand, within MMP_RS03660 at 690.611 kb on + strand, within MMP_RS03660 at 690.649 kb on - strand, within MMP_RS03660 at 690.652 kb on - strand, within MMP_RS03660 at 690.653 kb on + strand, within MMP_RS03660 at 690.658 kb on - strand, within MMP_RS03660 at 690.661 kb on - strand, within MMP_RS03660 at 690.662 kb on + strand, within MMP_RS03660 at 690.676 kb on - strand, within MMP_RS03660 at 690.676 kb on - strand, within MMP_RS03660 at 690.677 kb on + strand, within MMP_RS03660 at 690.685 kb on + strand, within MMP_RS03660 at 690.761 kb on + strand, within MMP_RS03660
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 689,443 - -2.2 689,501 + +1.0 689,600 - MMP_RS03655 0.37 +3.1 689,613 + MMP_RS03655 0.41 +0.7 689,660 + MMP_RS03655 0.56 +1.1 689,660 + MMP_RS03655 0.56 +1.5 689,664 + MMP_RS03655 0.57 +1.6 689,706 - MMP_RS03655 0.70 +2.0 689,707 + MMP_RS03655 0.71 -0.5 689,707 + MMP_RS03655 0.71 +1.0 689,707 + MMP_RS03655 0.71 +1.3 689,827 + -0.3 689,871 + +0.3 689,878 - -1.0 689,879 + -0.1 689,879 + +1.5 690,172 - MMP_RS03660 0.23 -1.3 690,209 + MMP_RS03660 0.25 -0.6 690,215 + MMP_RS03660 0.26 +0.9 690,217 + MMP_RS03660 0.26 -0.7 690,217 + MMP_RS03660 0.26 -1.8 690,304 + MMP_RS03660 0.32 +1.0 690,306 + MMP_RS03660 0.33 +0.6 690,376 + MMP_RS03660 0.38 +2.8 690,413 - MMP_RS03660 0.40 +0.9 690,413 - MMP_RS03660 0.40 -0.7 690,414 + MMP_RS03660 0.41 -0.8 690,416 + MMP_RS03660 0.41 +0.5 690,457 - MMP_RS03660 0.44 -0.8 690,457 - MMP_RS03660 0.44 -0.3 690,457 - MMP_RS03660 0.44 +0.6 690,494 + MMP_RS03660 0.47 +0.3 690,577 - MMP_RS03660 0.53 -0.5 690,580 - MMP_RS03660 0.53 -2.8 690,611 + MMP_RS03660 0.55 +1.0 690,649 - MMP_RS03660 0.58 +0.7 690,652 - MMP_RS03660 0.58 -1.1 690,653 + MMP_RS03660 0.58 +0.4 690,658 - MMP_RS03660 0.59 +0.0 690,661 - MMP_RS03660 0.59 +0.1 690,662 + MMP_RS03660 0.59 +1.2 690,676 - MMP_RS03660 0.60 -0.1 690,676 - MMP_RS03660 0.60 +0.5 690,677 + MMP_RS03660 0.60 +1.9 690,685 + MMP_RS03660 0.61 -0.8 690,761 + MMP_RS03660 0.66 +0.2
Or see this region's nucleotide sequence