Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03335 and MMP_RS03340 are separated by 2 nucleotides MMP_RS03340 and MMP_RS03345 are separated by 213 nucleotides MMP_RS03345 and MMP_RS03350 are separated by 39 nucleotides MMP_RS03350 and MMP_RS03355 are separated by 108 nucleotides
MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670
_RS03335
MMP_RS03340: MMP_RS03340 - ABC transporter ATP-binding protein, at 627,673 to 628,398
_RS03340
MMP_RS03345: MMP_RS03345 - hypothetical protein, at 628,612 to 629,844
_RS03345
MMP_RS03350: MMP_RS03350 - winged helix-turn-helix domain-containing protein, at 629,884 to 630,426
_RS03350
MMP_RS03355: MMP_RS03355 - beta-propeller domain-containing protein, at 630,535 to 632,772
_RS03355
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 627.653 kb on + strand at 627.726 kb on - strand at 627.971 kb on - strand, within MMP_RS03340 at 628.394 kb on - strand at 628.441 kb on + strand at 628.506 kb on - strand at 628.544 kb on - strand at 628.551 kb on - strand at 628.559 kb on - strand at 628.559 kb on - strand at 628.561 kb on - strand at 628.579 kb on - strand at 628.745 kb on - strand, within MMP_RS03345 at 628.746 kb on + strand, within MMP_RS03345 at 628.746 kb on + strand, within MMP_RS03345 at 628.795 kb on - strand, within MMP_RS03345 at 628.800 kb on - strand, within MMP_RS03345 at 628.817 kb on - strand, within MMP_RS03345 at 628.999 kb on - strand, within MMP_RS03345 at 629.048 kb on - strand, within MMP_RS03345 at 629.049 kb on + strand, within MMP_RS03345 at 629.053 kb on - strand, within MMP_RS03345 at 629.063 kb on - strand, within MMP_RS03345 at 629.064 kb on + strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.142 kb on + strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.366 kb on + strand, within MMP_RS03345 at 629.368 kb on + strand, within MMP_RS03345 at 629.557 kb on - strand, within MMP_RS03345 at 629.569 kb on + strand, within MMP_RS03345 at 629.608 kb on - strand, within MMP_RS03345 at 629.674 kb on - strand, within MMP_RS03345 at 629.754 kb on - strand at 629.760 kb on - strand at 629.768 kb on - strand at 629.790 kb on + strand at 629.801 kb on - strand at 629.802 kb on + strand at 629.802 kb on + strand at 629.804 kb on + strand at 629.805 kb on - strand at 629.845 kb on - strand at 629.883 kb on - strand at 629.952 kb on + strand, within MMP_RS03350 at 630.202 kb on + strand, within MMP_RS03350 at 630.203 kb on - strand, within MMP_RS03350 at 630.322 kb on + strand, within MMP_RS03350 at 630.407 kb on - strand at 630.412 kb on - strand at 630.413 kb on + strand at 630.483 kb on - strand at 630.575 kb on - strand at 630.599 kb on + strand at 630.599 kb on + strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.631 kb on + strand at 630.713 kb on + strand at 630.730 kb on + strand at 630.794 kb on + strand, within MMP_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 627,653 + -1.5 627,726 - -0.8 627,971 - MMP_RS03340 0.41 +1.0 628,394 - +0.9 628,441 + -0.9 628,506 - +0.2 628,544 - +0.4 628,551 - +1.3 628,559 - -0.1 628,559 - +1.4 628,561 - +0.4 628,579 - -0.9 628,745 - MMP_RS03345 0.11 -0.5 628,746 + MMP_RS03345 0.11 +0.1 628,746 + MMP_RS03345 0.11 +0.8 628,795 - MMP_RS03345 0.15 -0.3 628,800 - MMP_RS03345 0.15 +2.5 628,817 - MMP_RS03345 0.17 -0.9 628,999 - MMP_RS03345 0.31 +0.2 629,048 - MMP_RS03345 0.35 +2.0 629,049 + MMP_RS03345 0.35 +0.0 629,053 - MMP_RS03345 0.36 -0.6 629,063 - MMP_RS03345 0.37 -1.8 629,064 + MMP_RS03345 0.37 -2.4 629,065 - MMP_RS03345 0.37 +1.3 629,065 - MMP_RS03345 0.37 +1.3 629,065 - MMP_RS03345 0.37 -0.6 629,141 - MMP_RS03345 0.43 -1.6 629,141 - MMP_RS03345 0.43 +0.6 629,142 + MMP_RS03345 0.43 -0.5 629,143 - MMP_RS03345 0.43 +0.7 629,143 - MMP_RS03345 0.43 +0.3 629,144 + MMP_RS03345 0.43 +0.4 629,144 + MMP_RS03345 0.43 -0.5 629,366 + MMP_RS03345 0.61 +3.2 629,368 + MMP_RS03345 0.61 -0.4 629,557 - MMP_RS03345 0.77 +0.2 629,569 + MMP_RS03345 0.78 +0.2 629,608 - MMP_RS03345 0.81 +0.3 629,674 - MMP_RS03345 0.86 +1.6 629,754 - +1.0 629,760 - +0.3 629,768 - +1.3 629,790 + +0.8 629,801 - -0.2 629,802 + +0.0 629,802 + -0.0 629,804 + -0.7 629,805 - +0.9 629,845 - +0.7 629,883 - +1.2 629,952 + MMP_RS03350 0.13 +0.9 630,202 + MMP_RS03350 0.59 -2.2 630,203 - MMP_RS03350 0.59 -0.4 630,322 + MMP_RS03350 0.81 -1.0 630,407 - -0.8 630,412 - -0.7 630,413 + +0.3 630,483 - +1.1 630,575 - +1.5 630,599 + -1.1 630,599 + -0.5 630,628 - +0.5 630,628 - -1.0 630,631 + +0.8 630,713 + +0.8 630,730 + +0.1 630,794 + MMP_RS03355 0.12 -2.1
Or see this region's nucleotide sequence