Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03005 and MMP_RS03010 are separated by 73 nucleotides MMP_RS03010 and MMP_RS03015 are separated by 8 nucleotides
MMP_RS03005: MMP_RS03005 - S-layer protein, at 568,527 to 570,113
_RS03005
MMP_RS03010: MMP_RS03010 - cupin domain-containing protein, at 570,187 to 570,687
_RS03010
MMP_RS03015: MMP_RS03015 - GTP 3' 8-cyclase MoaA, at 570,696 to 571,589
_RS03015
Position (kb) 570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 569.219 kb on - strand, within MMP_RS03005 at 569.219 kb on - strand, within MMP_RS03005 at 569.225 kb on - strand, within MMP_RS03005 at 569.261 kb on + strand, within MMP_RS03005 at 569.316 kb on - strand, within MMP_RS03005 at 569.320 kb on - strand, within MMP_RS03005 at 569.365 kb on - strand, within MMP_RS03005 at 569.367 kb on - strand, within MMP_RS03005 at 569.368 kb on + strand, within MMP_RS03005 at 569.370 kb on - strand, within MMP_RS03005 at 569.370 kb on - strand, within MMP_RS03005 at 569.371 kb on + strand, within MMP_RS03005 at 569.442 kb on - strand, within MMP_RS03005 at 569.484 kb on - strand, within MMP_RS03005 at 569.485 kb on + strand, within MMP_RS03005 at 569.498 kb on + strand, within MMP_RS03005 at 569.505 kb on + strand, within MMP_RS03005 at 569.580 kb on + strand, within MMP_RS03005 at 569.617 kb on + strand, within MMP_RS03005 at 569.617 kb on + strand, within MMP_RS03005 at 569.617 kb on + strand, within MMP_RS03005 at 569.617 kb on + strand, within MMP_RS03005 at 569.731 kb on - strand, within MMP_RS03005 at 569.731 kb on - strand, within MMP_RS03005 at 570.001 kb on + strand at 570.060 kb on - strand at 570.061 kb on + strand at 570.064 kb on + strand at 570.064 kb on + strand at 570.068 kb on - strand at 570.078 kb on - strand at 570.079 kb on + strand at 570.083 kb on - strand at 570.083 kb on - strand at 570.113 kb on - strand at 570.135 kb on - strand at 570.139 kb on + strand at 570.139 kb on + strand at 570.142 kb on + strand at 570.164 kb on - strand at 570.361 kb on + strand, within MMP_RS03010 at 570.410 kb on + strand, within MMP_RS03010 at 570.414 kb on - strand, within MMP_RS03010 at 570.415 kb on + strand, within MMP_RS03010 at 570.416 kb on - strand, within MMP_RS03010 at 570.436 kb on + strand, within MMP_RS03010 at 570.439 kb on + strand, within MMP_RS03010 at 570.445 kb on + strand, within MMP_RS03010 at 570.448 kb on - strand, within MMP_RS03010 at 570.449 kb on + strand, within MMP_RS03010 at 570.449 kb on + strand, within MMP_RS03010 at 570.468 kb on + strand, within MMP_RS03010 at 570.524 kb on + strand, within MMP_RS03010 at 570.534 kb on + strand, within MMP_RS03010 at 570.544 kb on + strand, within MMP_RS03010 at 570.548 kb on - strand, within MMP_RS03010 at 570.567 kb on + strand, within MMP_RS03010 at 570.567 kb on + strand, within MMP_RS03010 at 570.577 kb on - strand, within MMP_RS03010 at 570.820 kb on + strand, within MMP_RS03015 at 570.836 kb on - strand, within MMP_RS03015 at 570.915 kb on + strand, within MMP_RS03015 at 570.950 kb on - strand, within MMP_RS03015 at 570.951 kb on + strand, within MMP_RS03015 at 570.954 kb on - strand, within MMP_RS03015 at 570.954 kb on - strand, within MMP_RS03015 at 570.954 kb on - strand, within MMP_RS03015 at 570.955 kb on + strand, within MMP_RS03015 at 570.955 kb on + strand, within MMP_RS03015 at 570.955 kb on + strand, within MMP_RS03015 at 571.002 kb on - strand, within MMP_RS03015 at 571.003 kb on + strand, within MMP_RS03015 at 571.239 kb on + strand, within MMP_RS03015 at 571.302 kb on - strand, within MMP_RS03015 at 571.354 kb on - strand, within MMP_RS03015 at 571.668 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 569,219 - MMP_RS03005 0.44 +0.9 569,219 - MMP_RS03005 0.44 +0.5 569,225 - MMP_RS03005 0.44 +1.9 569,261 + MMP_RS03005 0.46 -1.9 569,316 - MMP_RS03005 0.50 -0.7 569,320 - MMP_RS03005 0.50 +2.1 569,365 - MMP_RS03005 0.53 +1.2 569,367 - MMP_RS03005 0.53 +2.1 569,368 + MMP_RS03005 0.53 +0.5 569,370 - MMP_RS03005 0.53 -0.8 569,370 - MMP_RS03005 0.53 +1.4 569,371 + MMP_RS03005 0.53 -0.6 569,442 - MMP_RS03005 0.58 -0.5 569,484 - MMP_RS03005 0.60 -0.3 569,485 + MMP_RS03005 0.60 +0.8 569,498 + MMP_RS03005 0.61 +0.5 569,505 + MMP_RS03005 0.62 +4.5 569,580 + MMP_RS03005 0.66 -1.2 569,617 + MMP_RS03005 0.69 -1.0 569,617 + MMP_RS03005 0.69 -0.3 569,617 + MMP_RS03005 0.69 +1.3 569,617 + MMP_RS03005 0.69 -0.8 569,731 - MMP_RS03005 0.76 +0.4 569,731 - MMP_RS03005 0.76 -1.1 570,001 + -0.7 570,060 - -0.7 570,061 + +2.7 570,064 + -1.8 570,064 + +0.0 570,068 - -1.1 570,078 - +0.3 570,079 + -1.6 570,083 - -2.1 570,083 - +2.0 570,113 - +1.5 570,135 - +0.1 570,139 + +0.9 570,139 + +1.1 570,142 + +1.2 570,164 - -2.2 570,361 + MMP_RS03010 0.35 +4.3 570,410 + MMP_RS03010 0.45 -0.0 570,414 - MMP_RS03010 0.45 +0.3 570,415 + MMP_RS03010 0.46 +1.6 570,416 - MMP_RS03010 0.46 +1.3 570,436 + MMP_RS03010 0.50 -0.0 570,439 + MMP_RS03010 0.50 -1.1 570,445 + MMP_RS03010 0.51 +0.6 570,448 - MMP_RS03010 0.52 -0.6 570,449 + MMP_RS03010 0.52 +0.3 570,449 + MMP_RS03010 0.52 +1.5 570,468 + MMP_RS03010 0.56 -0.4 570,524 + MMP_RS03010 0.67 +0.5 570,534 + MMP_RS03010 0.69 +1.4 570,544 + MMP_RS03010 0.71 +1.0 570,548 - MMP_RS03010 0.72 +1.8 570,567 + MMP_RS03010 0.76 +1.2 570,567 + MMP_RS03010 0.76 -0.3 570,577 - MMP_RS03010 0.78 +1.6 570,820 + MMP_RS03015 0.14 -3.1 570,836 - MMP_RS03015 0.16 -1.3 570,915 + MMP_RS03015 0.24 -1.3 570,950 - MMP_RS03015 0.28 -1.1 570,951 + MMP_RS03015 0.29 -1.6 570,954 - MMP_RS03015 0.29 -0.1 570,954 - MMP_RS03015 0.29 +0.4 570,954 - MMP_RS03015 0.29 -2.5 570,955 + MMP_RS03015 0.29 -1.1 570,955 + MMP_RS03015 0.29 -1.2 570,955 + MMP_RS03015 0.29 -2.2 571,002 - MMP_RS03015 0.34 -2.5 571,003 + MMP_RS03015 0.34 -2.2 571,239 + MMP_RS03015 0.61 -1.6 571,302 - MMP_RS03015 0.68 -1.3 571,354 - MMP_RS03015 0.74 -1.6 571,668 + +0.3
Or see this region's nucleotide sequence