Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02900 and MMP_RS02905 are separated by 9 nucleotides MMP_RS02905 and MMP_RS02910 are separated by 170 nucleotides MMP_RS02910 and MMP_RS02915 are separated by 34 nucleotides MMP_RS02915 and MMP_RS02920 are separated by 77 nucleotides
MMP_RS02900: MMP_RS02900 - imidazoleglycerol-phosphate dehydratase HisB, at 552,862 to 553,434
_RS02900
MMP_RS02905: MMP_RS02905 - 2-thiouracil desulfurase family protein, at 553,444 to 553,992
_RS02905
MMP_RS02910: MMP_RS02910 - ABC transporter substrate-binding protein, at 554,163 to 554,957
_RS02910
MMP_RS02915: MMP_RS02915 - amino acid ABC transporter permease, at 554,992 to 555,651
_RS02915
MMP_RS02920: MMP_RS02920 - DMT family transporter, at 555,729 to 556,619
_RS02920
Position (kb) 554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 553.313 kb on - strand, within MMP_RS02900 at 553.530 kb on - strand, within MMP_RS02905 at 553.717 kb on + strand, within MMP_RS02905 at 553.737 kb on + strand, within MMP_RS02905 at 553.746 kb on + strand, within MMP_RS02905 at 554.018 kb on - strand at 554.055 kb on - strand at 554.066 kb on - strand at 554.118 kb on - strand at 554.171 kb on - strand at 554.252 kb on - strand, within MMP_RS02910 at 554.294 kb on + strand, within MMP_RS02910 at 554.472 kb on - strand, within MMP_RS02910 at 554.678 kb on + strand, within MMP_RS02910 at 554.700 kb on - strand, within MMP_RS02910 at 554.766 kb on - strand, within MMP_RS02910 at 555.152 kb on - strand, within MMP_RS02915 at 555.164 kb on - strand, within MMP_RS02915 at 555.211 kb on - strand, within MMP_RS02915 at 555.423 kb on - strand, within MMP_RS02915 at 555.683 kb on - strand at 555.684 kb on + strand at 555.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 553,313 - MMP_RS02900 0.79 -0.3 553,530 - MMP_RS02905 0.16 -1.0 553,717 + MMP_RS02905 0.50 +0.9 553,737 + MMP_RS02905 0.53 -0.1 553,746 + MMP_RS02905 0.55 +0.6 554,018 - +0.5 554,055 - -1.4 554,066 - -0.2 554,118 - -1.5 554,171 - -3.3 554,252 - MMP_RS02910 0.11 +0.4 554,294 + MMP_RS02910 0.16 +1.5 554,472 - MMP_RS02910 0.39 -0.1 554,678 + MMP_RS02910 0.65 -0.0 554,700 - MMP_RS02910 0.68 +0.4 554,766 - MMP_RS02910 0.76 +3.1 555,152 - MMP_RS02915 0.24 +0.8 555,164 - MMP_RS02915 0.26 -1.0 555,211 - MMP_RS02915 0.33 +0.9 555,423 - MMP_RS02915 0.65 +0.6 555,683 - +0.2 555,684 + +1.0 555,699 - +0.6
Or see this region's nucleotide sequence