Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02730 and MMP_RS02735 are separated by 27 nucleotides MMP_RS02735 and MMP_RS02740 are separated by 80 nucleotides MMP_RS02740 and MMP_RS02745 are separated by 96 nucleotides MMP_RS02745 and MMP_RS02750 are separated by 15 nucleotides
MMP_RS02730: MMP_RS02730 - ModD protein, at 521,710 to 522,561
_RS02730
MMP_RS02735: MMP_RS02735 - MBL fold metallo-hydrolase, at 522,589 to 523,119
_RS02735
MMP_RS02740: MMP_RS02740 - hypothetical protein, at 523,200 to 523,469
_RS02740
MMP_RS02745: MMP_RS02745 - hypothetical protein, at 523,566 to 523,943
_RS02745
MMP_RS02750: MMP_RS02750 - HAD-IC family P-type ATPase, at 523,959 to 526,463
_RS02750
Position (kb) 523
524 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 522.461 kb on - strand, within MMP_RS02730 at 522.469 kb on - strand, within MMP_RS02730 at 522.542 kb on - strand at 522.563 kb on - strand at 522.583 kb on - strand at 522.586 kb on + strand at 522.719 kb on + strand, within MMP_RS02735 at 522.759 kb on + strand, within MMP_RS02735 at 522.759 kb on + strand, within MMP_RS02735 at 522.811 kb on + strand, within MMP_RS02735 at 522.833 kb on + strand, within MMP_RS02735 at 522.922 kb on - strand, within MMP_RS02735 at 522.931 kb on - strand, within MMP_RS02735 at 523.013 kb on + strand, within MMP_RS02735 at 523.174 kb on + strand at 523.186 kb on - strand at 523.191 kb on - strand at 523.299 kb on - strand, within MMP_RS02740 at 523.368 kb on - strand, within MMP_RS02740 at 523.397 kb on - strand, within MMP_RS02740 at 523.414 kb on + strand, within MMP_RS02740 at 523.515 kb on - strand at 523.515 kb on - strand at 523.517 kb on - strand at 523.520 kb on - strand at 523.521 kb on + strand at 523.523 kb on + strand at 523.525 kb on - strand at 523.629 kb on + strand, within MMP_RS02745 at 523.840 kb on + strand, within MMP_RS02745 at 524.212 kb on - strand, within MMP_RS02750 at 524.212 kb on - strand, within MMP_RS02750 at 524.214 kb on - strand, within MMP_RS02750 at 524.289 kb on - strand, within MMP_RS02750 at 524.289 kb on - strand, within MMP_RS02750 at 524.289 kb on - strand, within MMP_RS02750 at 524.290 kb on + strand, within MMP_RS02750 at 524.290 kb on + strand, within MMP_RS02750 at 524.292 kb on - strand, within MMP_RS02750 at 524.292 kb on - strand, within MMP_RS02750 at 524.293 kb on + strand, within MMP_RS02750 at 524.296 kb on - strand, within MMP_RS02750 at 524.302 kb on - strand, within MMP_RS02750 at 524.364 kb on + strand, within MMP_RS02750 at 524.366 kb on + strand, within MMP_RS02750 at 524.410 kb on + strand, within MMP_RS02750 at 524.466 kb on + strand, within MMP_RS02750
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 522,461 - MMP_RS02730 0.88 -0.1 522,469 - MMP_RS02730 0.89 -0.9 522,542 - +0.5 522,563 - -0.8 522,583 - -1.1 522,586 + +0.2 522,719 + MMP_RS02735 0.24 +0.8 522,759 + MMP_RS02735 0.32 +0.1 522,759 + MMP_RS02735 0.32 +0.3 522,811 + MMP_RS02735 0.42 +0.8 522,833 + MMP_RS02735 0.46 +0.7 522,922 - MMP_RS02735 0.63 -1.3 522,931 - MMP_RS02735 0.64 -0.0 523,013 + MMP_RS02735 0.80 +0.7 523,174 + -0.8 523,186 - +0.4 523,191 - +1.6 523,299 - MMP_RS02740 0.37 +1.1 523,368 - MMP_RS02740 0.62 +1.0 523,397 - MMP_RS02740 0.73 +3.3 523,414 + MMP_RS02740 0.79 +1.0 523,515 - -1.8 523,515 - +0.7 523,517 - +1.6 523,520 - -0.7 523,521 + -0.5 523,523 + -0.4 523,525 - +1.0 523,629 + MMP_RS02745 0.17 -0.7 523,840 + MMP_RS02745 0.72 -0.9 524,212 - MMP_RS02750 0.10 +1.4 524,212 - MMP_RS02750 0.10 -0.9 524,214 - MMP_RS02750 0.10 +0.9 524,289 - MMP_RS02750 0.13 -0.7 524,289 - MMP_RS02750 0.13 -2.4 524,289 - MMP_RS02750 0.13 -0.2 524,290 + MMP_RS02750 0.13 +0.7 524,290 + MMP_RS02750 0.13 -0.3 524,292 - MMP_RS02750 0.13 -0.8 524,292 - MMP_RS02750 0.13 +1.5 524,293 + MMP_RS02750 0.13 +1.2 524,296 - MMP_RS02750 0.13 -0.3 524,302 - MMP_RS02750 0.14 -0.2 524,364 + MMP_RS02750 0.16 -0.8 524,366 + MMP_RS02750 0.16 -1.0 524,410 + MMP_RS02750 0.18 +3.3 524,466 + MMP_RS02750 0.20 -0.4
Or see this region's nucleotide sequence