Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02635 and MMP_RS02640 are separated by 255 nucleotides MMP_RS02640 and MMP_RS02645 are separated by 131 nucleotides MMP_RS02645 and MMP_RS08945 are separated by 112 nucleotides MMP_RS08945 and MMP_RS02650 are separated by 38 nucleotides MMP_RS02650 and MMP_RS02655 are separated by 145 nucleotides
MMP_RS02635: MMP_RS02635 - class I SAM-dependent methyltransferase, at 501,162 to 501,839
_RS02635
MMP_RS02640: MMP_RS02640 - DUF6198 family protein, at 502,095 to 502,658
_RS02640
MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530
_RS02645
MMP_RS08945: MMP_RS08945 - hypothetical protein, at 503,643 to 503,786
_RS08945
MMP_RS02650: MMP_RS02650 - flavodoxin family protein, at 503,825 to 504,376
_RS02650
MMP_RS02655: MMP_RS02655 - terpene cyclase/mutase family protein, at 504,522 to 506,024
_RS02655
Position (kb) 502
503
504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 501.792 kb on + strand at 501.792 kb on + strand at 501.793 kb on - strand at 501.834 kb on + strand at 501.862 kb on - strand at 501.874 kb on - strand at 501.875 kb on + strand at 501.876 kb on - strand at 501.876 kb on - strand at 501.908 kb on + strand at 501.988 kb on - strand at 501.989 kb on + strand at 501.991 kb on + strand at 502.011 kb on - strand at 502.016 kb on - strand at 502.035 kb on - strand at 502.035 kb on - strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.055 kb on + strand at 502.114 kb on - strand at 502.162 kb on + strand, within MMP_RS02640 at 502.162 kb on + strand, within MMP_RS02640 at 502.165 kb on - strand, within MMP_RS02640 at 502.166 kb on + strand, within MMP_RS02640 at 502.166 kb on + strand, within MMP_RS02640 at 502.187 kb on - strand, within MMP_RS02640 at 502.187 kb on - strand, within MMP_RS02640 at 502.188 kb on + strand, within MMP_RS02640 at 502.202 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.271 kb on + strand, within MMP_RS02640 at 502.271 kb on + strand, within MMP_RS02640 at 502.272 kb on - strand, within MMP_RS02640 at 502.277 kb on + strand, within MMP_RS02640 at 502.309 kb on - strand, within MMP_RS02640 at 502.309 kb on - strand, within MMP_RS02640 at 502.313 kb on - strand, within MMP_RS02640 at 502.316 kb on + strand, within MMP_RS02640 at 502.332 kb on + strand, within MMP_RS02640 at 502.333 kb on - strand, within MMP_RS02640 at 502.334 kb on + strand, within MMP_RS02640 at 502.347 kb on - strand, within MMP_RS02640 at 502.348 kb on + strand, within MMP_RS02640 at 502.355 kb on - strand, within MMP_RS02640 at 502.359 kb on - strand, within MMP_RS02640 at 502.364 kb on + strand, within MMP_RS02640 at 502.426 kb on - strand, within MMP_RS02640 at 502.550 kb on + strand, within MMP_RS02640 at 502.550 kb on + strand, within MMP_RS02640 at 502.759 kb on - strand at 502.766 kb on - strand at 502.766 kb on - strand at 502.767 kb on + strand at 502.771 kb on - strand at 502.771 kb on - strand at 502.806 kb on - strand at 502.829 kb on - strand at 502.850 kb on + strand at 502.995 kb on + strand, within MMP_RS02645 at 503.067 kb on + strand, within MMP_RS02645 at 503.215 kb on - strand, within MMP_RS02645 at 503.219 kb on - strand, within MMP_RS02645 at 503.252 kb on - strand, within MMP_RS02645 at 503.282 kb on - strand, within MMP_RS02645 at 503.295 kb on - strand, within MMP_RS02645 at 503.332 kb on - strand, within MMP_RS02645 at 503.372 kb on + strand, within MMP_RS02645 at 503.408 kb on - strand, within MMP_RS02645 at 503.409 kb on + strand, within MMP_RS02645 at 503.411 kb on + strand, within MMP_RS02645 at 503.535 kb on + strand at 503.546 kb on + strand at 503.553 kb on - strand at 503.556 kb on + strand at 503.562 kb on - strand at 503.563 kb on + strand at 503.612 kb on - strand at 503.613 kb on + strand at 503.633 kb on + strand at 503.640 kb on + strand at 503.642 kb on - strand at 503.643 kb on + strand at 503.673 kb on + strand, within MMP_RS08945 at 503.673 kb on + strand, within MMP_RS08945 at 503.714 kb on + strand, within MMP_RS08945 at 503.720 kb on - strand, within MMP_RS08945 at 503.720 kb on - strand, within MMP_RS08945 at 503.721 kb on + strand, within MMP_RS08945 at 503.721 kb on + strand, within MMP_RS08945 at 503.732 kb on - strand, within MMP_RS08945 at 503.732 kb on - strand, within MMP_RS08945 at 503.732 kb on - strand, within MMP_RS08945 at 503.733 kb on + strand, within MMP_RS08945 at 503.733 kb on + strand, within MMP_RS08945 at 503.733 kb on + strand, within MMP_RS08945 at 503.734 kb on - strand, within MMP_RS08945 at 503.734 kb on - strand, within MMP_RS08945 at 503.735 kb on + strand, within MMP_RS08945 at 503.735 kb on + strand, within MMP_RS08945 at 503.735 kb on + strand, within MMP_RS08945 at 503.759 kb on - strand, within MMP_RS08945 at 503.778 kb on + strand at 503.785 kb on + strand at 503.785 kb on + strand at 503.812 kb on + strand at 503.812 kb on + strand at 503.833 kb on - strand at 503.928 kb on - strand, within MMP_RS02650 at 503.929 kb on + strand, within MMP_RS02650 at 503.954 kb on + strand, within MMP_RS02650 at 503.954 kb on + strand, within MMP_RS02650 at 503.983 kb on - strand, within MMP_RS02650 at 504.017 kb on + strand, within MMP_RS02650 at 504.125 kb on - strand, within MMP_RS02650 at 504.132 kb on - strand, within MMP_RS02650 at 504.186 kb on + strand, within MMP_RS02650 at 504.224 kb on - strand, within MMP_RS02650 at 504.225 kb on + strand, within MMP_RS02650 at 504.264 kb on - strand, within MMP_RS02650 at 504.424 kb on - strand at 504.425 kb on + strand at 504.427 kb on + strand at 504.457 kb on + strand at 504.506 kb on - strand at 504.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 501,792 + +0.2 501,792 + +1.2 501,793 - -0.3 501,834 + +1.0 501,862 - +1.0 501,874 - +0.9 501,875 + -0.1 501,876 - +0.4 501,876 - -1.6 501,908 + -0.4 501,988 - -1.4 501,989 + +0.2 501,991 + +0.7 502,011 - -0.1 502,016 - -0.6 502,035 - -1.3 502,035 - +0.5 502,036 + -0.0 502,036 + -0.7 502,036 + +0.8 502,036 + +0.4 502,039 - +0.8 502,039 - -0.5 502,039 - -0.5 502,055 + +0.8 502,114 - +1.2 502,162 + MMP_RS02640 0.12 +2.2 502,162 + MMP_RS02640 0.12 -0.1 502,165 - MMP_RS02640 0.12 +1.8 502,166 + MMP_RS02640 0.13 -1.1 502,166 + MMP_RS02640 0.13 +0.6 502,187 - MMP_RS02640 0.16 +1.4 502,187 - MMP_RS02640 0.16 +0.6 502,188 + MMP_RS02640 0.16 -0.2 502,202 + MMP_RS02640 0.19 -0.5 502,220 + MMP_RS02640 0.22 +0.3 502,220 + MMP_RS02640 0.22 -0.3 502,220 + MMP_RS02640 0.22 -0.1 502,220 + MMP_RS02640 0.22 -0.7 502,271 + MMP_RS02640 0.31 +0.3 502,271 + MMP_RS02640 0.31 -2.5 502,272 - MMP_RS02640 0.31 +1.8 502,277 + MMP_RS02640 0.32 +0.7 502,309 - MMP_RS02640 0.38 -0.1 502,309 - MMP_RS02640 0.38 -0.1 502,313 - MMP_RS02640 0.39 +1.4 502,316 + MMP_RS02640 0.39 -0.0 502,332 + MMP_RS02640 0.42 +0.0 502,333 - MMP_RS02640 0.42 +0.1 502,334 + MMP_RS02640 0.42 +0.4 502,347 - MMP_RS02640 0.45 -0.4 502,348 + MMP_RS02640 0.45 -1.0 502,355 - MMP_RS02640 0.46 +0.3 502,359 - MMP_RS02640 0.47 +0.3 502,364 + MMP_RS02640 0.48 +0.5 502,426 - MMP_RS02640 0.59 +1.9 502,550 + MMP_RS02640 0.81 -0.4 502,550 + MMP_RS02640 0.81 +1.2 502,759 - +0.4 502,766 - -0.4 502,766 - -0.1 502,767 + +1.6 502,771 - +0.2 502,771 - +0.4 502,806 - -0.4 502,829 - +1.6 502,850 + +0.4 502,995 + MMP_RS02645 0.28 -0.6 503,067 + MMP_RS02645 0.37 -0.8 503,215 - MMP_RS02645 0.57 -0.3 503,219 - MMP_RS02645 0.58 +0.9 503,252 - MMP_RS02645 0.62 -0.3 503,282 - MMP_RS02645 0.66 -0.2 503,295 - MMP_RS02645 0.68 -1.5 503,332 - MMP_RS02645 0.73 +0.5 503,372 + MMP_RS02645 0.79 -0.4 503,408 - MMP_RS02645 0.83 -0.1 503,409 + MMP_RS02645 0.84 +0.1 503,411 + MMP_RS02645 0.84 -0.5 503,535 + +1.4 503,546 + +0.5 503,553 - -3.4 503,556 + +0.5 503,562 - +0.6 503,563 + +1.1 503,612 - +0.8 503,613 + -0.1 503,633 + +2.0 503,640 + -0.0 503,642 - -0.9 503,643 + +0.1 503,673 + MMP_RS08945 0.21 +0.6 503,673 + MMP_RS08945 0.21 +0.5 503,714 + MMP_RS08945 0.49 +0.2 503,720 - MMP_RS08945 0.53 +0.1 503,720 - MMP_RS08945 0.53 +1.4 503,721 + MMP_RS08945 0.54 -0.0 503,721 + MMP_RS08945 0.54 +1.9 503,732 - MMP_RS08945 0.62 -0.7 503,732 - MMP_RS08945 0.62 -0.8 503,732 - MMP_RS08945 0.62 -0.2 503,733 + MMP_RS08945 0.62 -1.0 503,733 + MMP_RS08945 0.62 -1.3 503,733 + MMP_RS08945 0.62 +0.8 503,734 - MMP_RS08945 0.63 -0.7 503,734 - MMP_RS08945 0.63 +3.6 503,735 + MMP_RS08945 0.64 -0.8 503,735 + MMP_RS08945 0.64 -0.7 503,735 + MMP_RS08945 0.64 -1.3 503,759 - MMP_RS08945 0.81 +0.4 503,778 + -0.0 503,785 + +1.0 503,785 + +1.0 503,812 + -0.0 503,812 + +1.1 503,833 - +1.0 503,928 - MMP_RS02650 0.19 +0.8 503,929 + MMP_RS02650 0.19 -0.1 503,954 + MMP_RS02650 0.23 -2.4 503,954 + MMP_RS02650 0.23 -1.6 503,983 - MMP_RS02650 0.29 -0.1 504,017 + MMP_RS02650 0.35 +0.5 504,125 - MMP_RS02650 0.54 +1.0 504,132 - MMP_RS02650 0.56 +1.3 504,186 + MMP_RS02650 0.65 -0.5 504,224 - MMP_RS02650 0.72 -0.8 504,225 + MMP_RS02650 0.72 +0.9 504,264 - MMP_RS02650 0.80 +2.3 504,424 - +1.4 504,425 + +2.0 504,427 + +0.5 504,457 + +2.0 504,506 - +0.8 504,528 + +2.0
Or see this region's nucleotide sequence