Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02620

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02615 and MMP_RS02620 are separated by 598 nucleotidesMMP_RS02620 and MMP_RS02625 overlap by 7 nucleotides MMP_RS02615: MMP_RS02615 - cobaltochelatase subunit CobN, at 489,237 to 495,425 _RS02615 MMP_RS02620: MMP_RS02620 - DEAD/DEAH box helicase, at 496,024 to 498,303 _RS02620 MMP_RS02625: MMP_RS02625 - ribonuclease H-like domain-containing protein, at 498,297 to 499,391 _RS02625 Position (kb) 496 497 498 499Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 495.360 kb on + strandat 495.378 kb on + strandat 495.379 kb on - strandat 495.435 kb on - strandat 495.469 kb on + strandat 495.483 kb on + strandat 495.486 kb on - strandat 495.572 kb on - strandat 495.612 kb on - strandat 495.613 kb on + strandat 495.640 kb on - strandat 495.641 kb on + strandat 495.725 kb on + strandat 495.744 kb on - strandat 495.744 kb on - strandat 495.745 kb on + strandat 495.745 kb on + strandat 495.745 kb on + strandat 495.746 kb on - strandat 495.746 kb on - strandat 495.746 kb on - strandat 495.747 kb on + strandat 495.747 kb on + strandat 495.747 kb on + strandat 495.748 kb on - strandat 495.749 kb on + strandat 495.830 kb on + strandat 495.850 kb on - strandat 495.850 kb on - strandat 495.851 kb on + strandat 495.960 kb on + strandat 495.983 kb on - strandat 495.989 kb on + strandat 495.991 kb on + strandat 496.015 kb on - strandat 496.015 kb on - strandat 496.279 kb on + strand, within MMP_RS02620at 496.318 kb on - strand, within MMP_RS02620at 496.320 kb on - strand, within MMP_RS02620at 496.518 kb on - strand, within MMP_RS02620at 496.519 kb on + strand, within MMP_RS02620at 496.519 kb on + strand, within MMP_RS02620at 496.523 kb on - strand, within MMP_RS02620at 496.531 kb on + strand, within MMP_RS02620at 496.534 kb on - strand, within MMP_RS02620at 496.594 kb on + strand, within MMP_RS02620at 496.651 kb on + strand, within MMP_RS02620at 496.659 kb on - strand, within MMP_RS02620at 496.663 kb on - strand, within MMP_RS02620at 496.663 kb on - strand, within MMP_RS02620at 496.664 kb on + strand, within MMP_RS02620at 496.690 kb on - strand, within MMP_RS02620at 496.690 kb on - strand, within MMP_RS02620at 496.697 kb on - strand, within MMP_RS02620at 496.888 kb on - strand, within MMP_RS02620at 497.074 kb on - strand, within MMP_RS02620at 497.411 kb on + strand, within MMP_RS02620at 497.511 kb on - strand, within MMP_RS02620at 497.512 kb on + strand, within MMP_RS02620at 497.584 kb on - strand, within MMP_RS02620at 497.633 kb on + strand, within MMP_RS02620at 497.654 kb on - strand, within MMP_RS02620at 497.683 kb on - strand, within MMP_RS02620at 497.697 kb on - strand, within MMP_RS02620at 497.720 kb on - strand, within MMP_RS02620at 497.720 kb on - strand, within MMP_RS02620at 497.721 kb on + strand, within MMP_RS02620at 497.741 kb on + strand, within MMP_RS02620at 497.792 kb on + strand, within MMP_RS02620at 497.863 kb on + strand, within MMP_RS02620at 497.883 kb on + strand, within MMP_RS02620at 498.089 kb on + strandat 498.119 kb on - strandat 498.167 kb on + strandat 498.231 kb on - strandat 498.320 kb on - strandat 498.339 kb on - strandat 498.348 kb on - strandat 498.348 kb on - strandat 498.348 kb on - strandat 498.363 kb on - strandat 498.403 kb on - strandat 498.404 kb on + strandat 498.465 kb on - strand, within MMP_RS02625at 498.480 kb on + strand, within MMP_RS02625at 498.580 kb on - strand, within MMP_RS02625at 498.603 kb on + strand, within MMP_RS02625at 498.612 kb on + strand, within MMP_RS02625at 498.810 kb on - strand, within MMP_RS02625at 498.822 kb on - strand, within MMP_RS02625at 498.884 kb on - strand, within MMP_RS02625at 499.068 kb on - strand, within MMP_RS02625at 499.124 kb on + strand, within MMP_RS02625at 499.165 kb on - strand, within MMP_RS02625at 499.173 kb on - strand, within MMP_RS02625

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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495,360 + +0.1
495,378 + +1.0
495,379 - -0.9
495,435 - +3.9
495,469 + +1.3
495,483 + +1.2
495,486 - +0.3
495,572 - -1.7
495,612 - +2.2
495,613 + +0.8
495,640 - +0.1
495,641 + -0.4
495,725 + +2.2
495,744 - +0.3
495,744 - +1.1
495,745 + -1.5
495,745 + -0.6
495,745 + +1.0
495,746 - -0.4
495,746 - +2.7
495,746 - +0.0
495,747 + +0.5
495,747 + +0.1
495,747 + +1.8
495,748 - +2.4
495,749 + +2.5
495,830 + +0.5
495,850 - +0.1
495,850 - +1.1
495,851 + +0.4
495,960 + +0.6
495,983 - -0.3
495,989 + -1.7
495,991 + -0.4
496,015 - +0.5
496,015 - +2.2
496,279 + MMP_RS02620 0.11 +0.8
496,318 - MMP_RS02620 0.13 +0.4
496,320 - MMP_RS02620 0.13 +1.2
496,518 - MMP_RS02620 0.22 +0.1
496,519 + MMP_RS02620 0.22 +1.6
496,519 + MMP_RS02620 0.22 -0.7
496,523 - MMP_RS02620 0.22 -0.7
496,531 + MMP_RS02620 0.22 -0.3
496,534 - MMP_RS02620 0.22 -0.4
496,594 + MMP_RS02620 0.25 +0.8
496,651 + MMP_RS02620 0.28 -0.4
496,659 - MMP_RS02620 0.28 -0.8
496,663 - MMP_RS02620 0.28 +0.2
496,663 - MMP_RS02620 0.28 -0.2
496,664 + MMP_RS02620 0.28 -0.2
496,690 - MMP_RS02620 0.29 +0.4
496,690 - MMP_RS02620 0.29 +1.7
496,697 - MMP_RS02620 0.30 +0.3
496,888 - MMP_RS02620 0.38 -2.6
497,074 - MMP_RS02620 0.46 -0.9
497,411 + MMP_RS02620 0.61 +2.5
497,511 - MMP_RS02620 0.65 +1.3
497,512 + MMP_RS02620 0.65 +0.2
497,584 - MMP_RS02620 0.68 -0.4
497,633 + MMP_RS02620 0.71 -0.7
497,654 - MMP_RS02620 0.71 -0.5
497,683 - MMP_RS02620 0.73 +2.3
497,697 - MMP_RS02620 0.73 -0.0
497,720 - MMP_RS02620 0.74 +0.1
497,720 - MMP_RS02620 0.74 -1.4
497,721 + MMP_RS02620 0.74 -0.1
497,741 + MMP_RS02620 0.75 -0.6
497,792 + MMP_RS02620 0.78 -0.2
497,863 + MMP_RS02620 0.81 -0.8
497,883 + MMP_RS02620 0.82 -1.0
498,089 + +0.3
498,119 - +2.0
498,167 + +0.1
498,231 - -0.4
498,320 - -0.0
498,339 - -0.3
498,348 - +2.1
498,348 - -1.6
498,348 - +1.7
498,363 - +0.8
498,403 - +0.7
498,404 + -0.1
498,465 - MMP_RS02625 0.15 +1.2
498,480 + MMP_RS02625 0.17 +0.2
498,580 - MMP_RS02625 0.26 -0.7
498,603 + MMP_RS02625 0.28 -1.7
498,612 + MMP_RS02625 0.29 -0.3
498,810 - MMP_RS02625 0.47 -1.7
498,822 - MMP_RS02625 0.48 +0.2
498,884 - MMP_RS02625 0.54 -0.7
499,068 - MMP_RS02625 0.70 +1.3
499,124 + MMP_RS02625 0.76 -0.2
499,165 - MMP_RS02625 0.79 +0.1
499,173 - MMP_RS02625 0.80 +0.3

Or see this region's nucleotide sequence