Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02550

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02545 and MMP_RS02550 are separated by 249 nucleotidesMMP_RS02550 and MMP_RS02555 are separated by 1 nucleotides MMP_RS02545: MMP_RS02545 - hypothetical protein, at 475,377 to 475,787 _RS02545 MMP_RS02550: MMP_RS02550 - helix-turn-helix transcriptional regulator, at 476,037 to 476,249 _RS02550 MMP_RS02555: MMP_RS02555 - AIPR family protein, at 476,251 to 478,203 _RS02555 Position (kb) 476 477Strain fitness (log2 ratio) -2 -1 0 1 2at 475.037 kb on - strandat 475.271 kb on - strandat 475.350 kb on - strandat 475.413 kb on + strandat 475.414 kb on - strandat 475.415 kb on + strandat 475.459 kb on + strand, within MMP_RS02545at 475.480 kb on + strand, within MMP_RS02545at 475.504 kb on + strand, within MMP_RS02545at 475.548 kb on - strand, within MMP_RS02545at 475.605 kb on + strand, within MMP_RS02545at 475.710 kb on - strand, within MMP_RS02545at 475.724 kb on + strand, within MMP_RS02545at 475.800 kb on - strandat 475.847 kb on - strandat 475.847 kb on - strandat 475.847 kb on - strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.849 kb on - strandat 475.849 kb on - strandat 475.850 kb on + strandat 475.853 kb on - strandat 475.853 kb on - strandat 475.853 kb on - strandat 475.854 kb on + strandat 475.854 kb on + strandat 475.855 kb on - strandat 475.856 kb on + strandat 475.917 kb on - strandat 475.917 kb on - strandat 475.928 kb on + strandat 475.937 kb on - strandat 475.938 kb on + strandat 475.942 kb on + strandat 475.951 kb on + strandat 476.012 kb on + strandat 476.040 kb on - strandat 476.099 kb on + strand, within MMP_RS02550at 476.116 kb on + strand, within MMP_RS02550at 476.127 kb on - strand, within MMP_RS02550at 476.129 kb on - strand, within MMP_RS02550at 476.170 kb on + strand, within MMP_RS02550at 476.170 kb on + strand, within MMP_RS02550at 476.179 kb on - strand, within MMP_RS02550at 476.253 kb on + strandat 476.255 kb on + strandat 476.290 kb on + strandat 476.314 kb on + strandat 476.337 kb on - strandat 476.377 kb on - strandat 476.408 kb on - strandat 476.409 kb on + strandat 476.445 kb on - strandat 476.446 kb on + strandat 476.453 kb on + strand, within MMP_RS02555at 476.477 kb on - strand, within MMP_RS02555at 476.478 kb on + strand, within MMP_RS02555at 476.478 kb on + strand, within MMP_RS02555at 476.478 kb on + strand, within MMP_RS02555at 476.479 kb on - strand, within MMP_RS02555at 476.510 kb on + strand, within MMP_RS02555at 476.529 kb on - strand, within MMP_RS02555at 476.562 kb on + strand, within MMP_RS02555at 476.620 kb on + strand, within MMP_RS02555at 476.648 kb on + strand, within MMP_RS02555at 476.652 kb on - strand, within MMP_RS02555at 476.685 kb on - strand, within MMP_RS02555at 476.711 kb on + strand, within MMP_RS02555at 476.714 kb on + strand, within MMP_RS02555at 476.773 kb on - strand, within MMP_RS02555at 476.799 kb on - strand, within MMP_RS02555at 476.888 kb on - strand, within MMP_RS02555at 476.894 kb on - strand, within MMP_RS02555at 476.894 kb on - strand, within MMP_RS02555at 476.895 kb on + strand, within MMP_RS02555at 476.897 kb on + strandat 476.897 kb on + strand, within MMP_RS02555at 476.929 kb on + strand, within MMP_RS02555at 476.931 kb on - strand, within MMP_RS02555at 476.946 kb on - strand, within MMP_RS02555at 476.947 kb on + strand, within MMP_RS02555at 476.960 kb on + strand, within MMP_RS02555at 476.983 kb on + strand, within MMP_RS02555at 477.048 kb on - strand, within MMP_RS02555at 477.106 kb on + strand, within MMP_RS02555at 477.106 kb on + strand, within MMP_RS02555at 477.106 kb on + strand, within MMP_RS02555at 477.110 kb on - strand, within MMP_RS02555at 477.111 kb on + strand, within MMP_RS02555at 477.111 kb on + strand, within MMP_RS02555at 477.118 kb on + strand, within MMP_RS02555at 477.153 kb on - strand, within MMP_RS02555at 477.160 kb on + strand, within MMP_RS02555at 477.166 kb on - strand, within MMP_RS02555at 477.180 kb on - strand, within MMP_RS02555at 477.184 kb on - strand, within MMP_RS02555at 477.205 kb on + strand, within MMP_RS02555at 477.218 kb on - strand, within MMP_RS02555at 477.227 kb on - strand, within MMP_RS02555at 477.228 kb on + strand, within MMP_RS02555at 477.228 kb on + strand, within MMP_RS02555

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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475,037 - +1.3
475,271 - +0.8
475,350 - -1.1
475,413 + +0.2
475,414 - -0.1
475,415 + -1.2
475,459 + MMP_RS02545 0.20 -0.7
475,480 + MMP_RS02545 0.25 -0.8
475,504 + MMP_RS02545 0.31 +1.2
475,548 - MMP_RS02545 0.42 -2.5
475,605 + MMP_RS02545 0.55 -1.0
475,710 - MMP_RS02545 0.81 -1.6
475,724 + MMP_RS02545 0.84 -1.1
475,800 - +2.7
475,847 - +0.2
475,847 - +0.6
475,847 - +0.7
475,848 + +1.8
475,848 + +1.3
475,848 + +1.2
475,849 - -0.4
475,849 - -1.3
475,850 + +0.5
475,853 - -0.4
475,853 - -0.3
475,853 - +1.0
475,854 + -0.2
475,854 + -0.8
475,855 - +0.6
475,856 + +0.0
475,917 - +0.3
475,917 - +0.7
475,928 + +1.7
475,937 - +1.3
475,938 + -0.3
475,942 + -0.7
475,951 + -1.4
476,012 + -1.0
476,040 - -2.6
476,099 + MMP_RS02550 0.29 -0.2
476,116 + MMP_RS02550 0.37 +0.0
476,127 - MMP_RS02550 0.42 +0.1
476,129 - MMP_RS02550 0.43 -2.3
476,170 + MMP_RS02550 0.62 +0.6
476,170 + MMP_RS02550 0.62 +0.7
476,179 - MMP_RS02550 0.67 +0.0
476,253 + +0.1
476,255 + +0.8
476,290 + -1.9
476,314 + -1.3
476,337 - +1.4
476,377 - -0.2
476,408 - -0.2
476,409 + +0.5
476,445 - +0.8
476,446 + +1.0
476,453 + MMP_RS02555 0.10 +1.2
476,477 - MMP_RS02555 0.12 +0.3
476,478 + MMP_RS02555 0.12 +1.0
476,478 + MMP_RS02555 0.12 +1.4
476,478 + MMP_RS02555 0.12 -1.1
476,479 - MMP_RS02555 0.12 +0.3
476,510 + MMP_RS02555 0.13 -0.5
476,529 - MMP_RS02555 0.14 -0.1
476,562 + MMP_RS02555 0.16 +0.1
476,620 + MMP_RS02555 0.19 -2.5
476,648 + MMP_RS02555 0.20 +0.1
476,652 - MMP_RS02555 0.21 +1.3
476,685 - MMP_RS02555 0.22 -0.7
476,711 + MMP_RS02555 0.24 -1.8
476,714 + MMP_RS02555 0.24 +0.6
476,773 - MMP_RS02555 0.27 +1.6
476,799 - MMP_RS02555 0.28 -0.2
476,888 - MMP_RS02555 0.33 +0.1
476,894 - MMP_RS02555 0.33 +0.3
476,894 - MMP_RS02555 0.33 +0.1
476,895 + MMP_RS02555 0.33 +0.9
476,897 + +2.5
476,897 + MMP_RS02555 0.33 +0.7
476,929 + MMP_RS02555 0.35 -0.4
476,931 - MMP_RS02555 0.35 -0.0
476,946 - MMP_RS02555 0.36 +1.0
476,947 + MMP_RS02555 0.36 +0.8
476,960 + MMP_RS02555 0.36 -0.5
476,983 + MMP_RS02555 0.37 +2.1
477,048 - MMP_RS02555 0.41 +0.7
477,106 + MMP_RS02555 0.44 +0.1
477,106 + MMP_RS02555 0.44 -0.6
477,106 + MMP_RS02555 0.44 +0.1
477,110 - MMP_RS02555 0.44 -0.6
477,111 + MMP_RS02555 0.44 +0.3
477,111 + MMP_RS02555 0.44 -0.4
477,118 + MMP_RS02555 0.44 -0.4
477,153 - MMP_RS02555 0.46 -1.3
477,160 + MMP_RS02555 0.47 +0.9
477,166 - MMP_RS02555 0.47 +1.3
477,180 - MMP_RS02555 0.48 +1.2
477,184 - MMP_RS02555 0.48 +2.1
477,205 + MMP_RS02555 0.49 -0.1
477,218 - MMP_RS02555 0.50 +0.1
477,227 - MMP_RS02555 0.50 -0.4
477,228 + MMP_RS02555 0.50 +0.2
477,228 + MMP_RS02555 0.50 -0.4

Or see this region's nucleotide sequence