Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02540 and MMP_RS02545 are separated by 586 nucleotides MMP_RS02545 and MMP_RS02550 are separated by 249 nucleotides MMP_RS02550 and MMP_RS02555 are separated by 1 nucleotides
MMP_RS02540: MMP_RS02540 - DUF2283 domain-containing protein, at 474,413 to 474,790
_RS02540
MMP_RS02545: MMP_RS02545 - hypothetical protein, at 475,377 to 475,787
_RS02545
MMP_RS02550: MMP_RS02550 - helix-turn-helix transcriptional regulator, at 476,037 to 476,249
_RS02550
MMP_RS02555: MMP_RS02555 - AIPR family protein, at 476,251 to 478,203
_RS02555
Position (kb) 475
476 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 474.657 kb on + strand, within MMP_RS02540 at 474.714 kb on - strand, within MMP_RS02540 at 474.742 kb on + strand, within MMP_RS02540 at 474.742 kb on + strand, within MMP_RS02540 at 474.746 kb on - strand, within MMP_RS02540 at 474.746 kb on - strand, within MMP_RS02540 at 474.746 kb on - strand, within MMP_RS02540 at 474.747 kb on + strand, within MMP_RS02540 at 474.766 kb on + strand at 474.814 kb on - strand at 474.814 kb on - strand at 474.839 kb on - strand at 474.840 kb on + strand at 474.841 kb on - strand at 474.841 kb on - strand at 474.846 kb on - strand at 474.847 kb on + strand at 474.847 kb on + strand at 474.852 kb on + strand at 474.880 kb on + strand at 474.883 kb on - strand at 474.900 kb on + strand at 475.037 kb on - strand at 475.271 kb on - strand at 475.350 kb on - strand at 475.413 kb on + strand at 475.414 kb on - strand at 475.415 kb on + strand at 475.459 kb on + strand, within MMP_RS02545 at 475.480 kb on + strand, within MMP_RS02545 at 475.504 kb on + strand, within MMP_RS02545 at 475.548 kb on - strand, within MMP_RS02545 at 475.605 kb on + strand, within MMP_RS02545 at 475.710 kb on - strand, within MMP_RS02545 at 475.724 kb on + strand, within MMP_RS02545 at 475.800 kb on - strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.849 kb on - strand at 475.849 kb on - strand at 475.850 kb on + strand at 475.853 kb on - strand at 475.853 kb on - strand at 475.853 kb on - strand at 475.854 kb on + strand at 475.854 kb on + strand at 475.855 kb on - strand at 475.856 kb on + strand at 475.917 kb on - strand at 475.917 kb on - strand at 475.928 kb on + strand at 475.937 kb on - strand at 475.938 kb on + strand at 475.942 kb on + strand at 475.951 kb on + strand at 476.012 kb on + strand at 476.040 kb on - strand at 476.099 kb on + strand, within MMP_RS02550 at 476.116 kb on + strand, within MMP_RS02550 at 476.127 kb on - strand, within MMP_RS02550 at 476.129 kb on - strand, within MMP_RS02550 at 476.170 kb on + strand, within MMP_RS02550 at 476.170 kb on + strand, within MMP_RS02550 at 476.179 kb on - strand, within MMP_RS02550 at 476.253 kb on + strand at 476.255 kb on + strand at 476.290 kb on + strand at 476.314 kb on + strand at 476.337 kb on - strand at 476.377 kb on - strand at 476.408 kb on - strand at 476.409 kb on + strand at 476.445 kb on - strand at 476.446 kb on + strand at 476.453 kb on + strand, within MMP_RS02555 at 476.477 kb on - strand, within MMP_RS02555 at 476.478 kb on + strand, within MMP_RS02555 at 476.478 kb on + strand, within MMP_RS02555 at 476.478 kb on + strand, within MMP_RS02555 at 476.479 kb on - strand, within MMP_RS02555 at 476.510 kb on + strand, within MMP_RS02555 at 476.529 kb on - strand, within MMP_RS02555 at 476.562 kb on + strand, within MMP_RS02555 at 476.620 kb on + strand, within MMP_RS02555 at 476.648 kb on + strand, within MMP_RS02555 at 476.652 kb on - strand, within MMP_RS02555 at 476.685 kb on - strand, within MMP_RS02555 at 476.711 kb on + strand, within MMP_RS02555 at 476.714 kb on + strand, within MMP_RS02555 at 476.773 kb on - strand, within MMP_RS02555
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 474,657 + MMP_RS02540 0.65 +0.3 474,714 - MMP_RS02540 0.80 -1.1 474,742 + MMP_RS02540 0.87 +0.1 474,742 + MMP_RS02540 0.87 -0.3 474,746 - MMP_RS02540 0.88 -1.2 474,746 - MMP_RS02540 0.88 -2.0 474,746 - MMP_RS02540 0.88 -1.5 474,747 + MMP_RS02540 0.88 +0.6 474,766 + -0.7 474,814 - +0.6 474,814 - +2.5 474,839 - -0.5 474,840 + +0.7 474,841 - +0.7 474,841 - -0.2 474,846 - -1.0 474,847 + -0.0 474,847 + +0.3 474,852 + +0.4 474,880 + +1.6 474,883 - +3.0 474,900 + +0.5 475,037 - +1.3 475,271 - +0.8 475,350 - -1.1 475,413 + +0.2 475,414 - -0.1 475,415 + -1.2 475,459 + MMP_RS02545 0.20 -0.7 475,480 + MMP_RS02545 0.25 -0.8 475,504 + MMP_RS02545 0.31 +1.2 475,548 - MMP_RS02545 0.42 -2.5 475,605 + MMP_RS02545 0.55 -1.0 475,710 - MMP_RS02545 0.81 -1.6 475,724 + MMP_RS02545 0.84 -1.1 475,800 - +2.7 475,847 - +0.2 475,847 - +0.6 475,847 - +0.7 475,848 + +1.8 475,848 + +1.3 475,848 + +1.2 475,849 - -0.4 475,849 - -1.3 475,850 + +0.5 475,853 - -0.4 475,853 - -0.3 475,853 - +1.0 475,854 + -0.2 475,854 + -0.8 475,855 - +0.6 475,856 + +0.0 475,917 - +0.3 475,917 - +0.7 475,928 + +1.7 475,937 - +1.3 475,938 + -0.3 475,942 + -0.7 475,951 + -1.4 476,012 + -1.0 476,040 - -2.6 476,099 + MMP_RS02550 0.29 -0.2 476,116 + MMP_RS02550 0.37 +0.0 476,127 - MMP_RS02550 0.42 +0.1 476,129 - MMP_RS02550 0.43 -2.3 476,170 + MMP_RS02550 0.62 +0.6 476,170 + MMP_RS02550 0.62 +0.7 476,179 - MMP_RS02550 0.67 +0.0 476,253 + +0.1 476,255 + +0.8 476,290 + -1.9 476,314 + -1.3 476,337 - +1.4 476,377 - -0.2 476,408 - -0.2 476,409 + +0.5 476,445 - +0.8 476,446 + +1.0 476,453 + MMP_RS02555 0.10 +1.2 476,477 - MMP_RS02555 0.12 +0.3 476,478 + MMP_RS02555 0.12 +1.0 476,478 + MMP_RS02555 0.12 +1.4 476,478 + MMP_RS02555 0.12 -1.1 476,479 - MMP_RS02555 0.12 +0.3 476,510 + MMP_RS02555 0.13 -0.5 476,529 - MMP_RS02555 0.14 -0.1 476,562 + MMP_RS02555 0.16 +0.1 476,620 + MMP_RS02555 0.19 -2.5 476,648 + MMP_RS02555 0.20 +0.1 476,652 - MMP_RS02555 0.21 +1.3 476,685 - MMP_RS02555 0.22 -0.7 476,711 + MMP_RS02555 0.24 -1.8 476,714 + MMP_RS02555 0.24 +0.6 476,773 - MMP_RS02555 0.27 +1.6
Or see this region's nucleotide sequence