Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02515 and MMP_RS02520 are separated by 26 nucleotides MMP_RS02520 and MMP_RS02525 are separated by 134 nucleotides MMP_RS02525 and MMP_RS02530 are separated by 732 nucleotides
MMP_RS02515: MMP_RS02515 - hypothetical protein, at 469,177 to 470,175
_RS02515
MMP_RS02520: MMP_RS02520 - hypothetical protein, at 470,202 to 471,008
_RS02520
MMP_RS02525: MMP_RS02525 - DUF2254 domain-containing protein, at 471,143 to 472,984
_RS02525
MMP_RS02530: MMP_RS02530 - type II toxin-antitoxin system mRNA interferase toxin RelE/StbE family, at 473,717 to 474,019
_RS02530
Position (kb) 471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 470.200 kb on - strand at 470.212 kb on - strand at 470.216 kb on - strand at 470.267 kb on - strand at 470.270 kb on - strand at 470.277 kb on - strand at 470.277 kb on - strand at 470.278 kb on + strand at 470.278 kb on + strand at 470.298 kb on - strand, within MMP_RS02520 at 470.299 kb on + strand, within MMP_RS02520 at 470.299 kb on + strand, within MMP_RS02520 at 470.299 kb on + strand, within MMP_RS02520 at 470.299 kb on + strand, within MMP_RS02520 at 470.299 kb on + strand, within MMP_RS02520 at 470.304 kb on + strand, within MMP_RS02520 at 470.304 kb on + strand, within MMP_RS02520 at 470.308 kb on + strand, within MMP_RS02520 at 470.363 kb on + strand, within MMP_RS02520 at 470.377 kb on - strand, within MMP_RS02520 at 470.377 kb on - strand, within MMP_RS02520 at 470.377 kb on - strand, within MMP_RS02520 at 470.377 kb on - strand, within MMP_RS02520 at 470.428 kb on - strand, within MMP_RS02520 at 470.441 kb on - strand, within MMP_RS02520 at 470.441 kb on - strand, within MMP_RS02520 at 470.447 kb on - strand, within MMP_RS02520 at 470.450 kb on + strand, within MMP_RS02520 at 470.474 kb on + strand, within MMP_RS02520 at 470.487 kb on + strand, within MMP_RS02520 at 470.499 kb on + strand, within MMP_RS02520 at 470.576 kb on + strand, within MMP_RS02520 at 470.582 kb on - strand, within MMP_RS02520 at 470.582 kb on - strand, within MMP_RS02520 at 470.587 kb on - strand, within MMP_RS02520 at 470.655 kb on + strand, within MMP_RS02520 at 470.662 kb on - strand, within MMP_RS02520 at 470.692 kb on - strand, within MMP_RS02520 at 470.764 kb on - strand, within MMP_RS02520 at 470.765 kb on + strand, within MMP_RS02520 at 470.913 kb on + strand, within MMP_RS02520 at 470.913 kb on + strand, within MMP_RS02520 at 470.965 kb on - strand at 470.965 kb on - strand at 470.971 kb on - strand at 470.971 kb on - strand at 470.971 kb on - strand at 470.998 kb on - strand at 470.998 kb on - strand at 470.999 kb on + strand at 470.999 kb on + strand at 471.050 kb on - strand at 471.120 kb on + strand at 471.121 kb on - strand at 471.314 kb on - strand at 471.314 kb on - strand at 471.315 kb on + strand at 471.315 kb on + strand at 471.315 kb on + strand at 471.316 kb on - strand at 471.413 kb on + strand, within MMP_RS02525 at 471.502 kb on - strand, within MMP_RS02525 at 471.502 kb on - strand, within MMP_RS02525 at 471.527 kb on + strand, within MMP_RS02525 at 471.537 kb on - strand, within MMP_RS02525 at 471.600 kb on - strand, within MMP_RS02525 at 471.693 kb on + strand, within MMP_RS02525 at 471.751 kb on + strand, within MMP_RS02525 at 471.776 kb on + strand, within MMP_RS02525 at 471.779 kb on + strand, within MMP_RS02525 at 471.780 kb on - strand, within MMP_RS02525 at 471.781 kb on + strand, within MMP_RS02525 at 471.817 kb on - strand, within MMP_RS02525 at 471.840 kb on - strand, within MMP_RS02525 at 471.885 kb on - strand, within MMP_RS02525 at 471.885 kb on - strand, within MMP_RS02525 at 471.887 kb on - strand, within MMP_RS02525 at 471.904 kb on - strand, within MMP_RS02525 at 471.905 kb on + strand, within MMP_RS02525 at 471.907 kb on - strand, within MMP_RS02525 at 471.908 kb on + strand, within MMP_RS02525 at 471.915 kb on + strand, within MMP_RS02525 at 471.919 kb on - strand, within MMP_RS02525 at 471.919 kb on - strand, within MMP_RS02525 at 471.922 kb on + strand, within MMP_RS02525 at 471.926 kb on - strand, within MMP_RS02525 at 471.927 kb on + strand, within MMP_RS02525 at 471.931 kb on + strand, within MMP_RS02525 at 471.990 kb on + strand, within MMP_RS02525 at 471.990 kb on + strand, within MMP_RS02525 at 471.990 kb on + strand, within MMP_RS02525 at 472.013 kb on + strand, within MMP_RS02525 at 472.013 kb on + strand, within MMP_RS02525 at 472.013 kb on + strand, within MMP_RS02525 at 472.015 kb on + strand, within MMP_RS02525 at 472.046 kb on - strand, within MMP_RS02525 at 472.070 kb on + strand, within MMP_RS02525 at 472.130 kb on + strand, within MMP_RS02525 at 472.133 kb on - strand, within MMP_RS02525 at 472.133 kb on - strand, within MMP_RS02525 at 472.136 kb on - strand, within MMP_RS02525 at 472.153 kb on - strand, within MMP_RS02525 at 472.158 kb on - strand, within MMP_RS02525 at 472.161 kb on + strand, within MMP_RS02525 at 472.177 kb on - strand, within MMP_RS02525 at 472.186 kb on - strand, within MMP_RS02525 at 472.453 kb on - strand, within MMP_RS02525 at 472.456 kb on - strand, within MMP_RS02525 at 472.517 kb on - strand, within MMP_RS02525 at 472.580 kb on - strand, within MMP_RS02525 at 472.654 kb on - strand, within MMP_RS02525 at 472.655 kb on + strand, within MMP_RS02525 at 472.656 kb on - strand, within MMP_RS02525 at 472.656 kb on - strand, within MMP_RS02525 at 472.657 kb on + strand, within MMP_RS02525 at 472.659 kb on + strand, within MMP_RS02525 at 472.659 kb on + strand, within MMP_RS02525 at 472.659 kb on + strand, within MMP_RS02525 at 472.659 kb on + strand, within MMP_RS02525 at 472.661 kb on - strand, within MMP_RS02525 at 472.773 kb on + strand, within MMP_RS02525 at 472.831 kb on + strand at 472.837 kb on - strand at 472.862 kb on + strand at 472.862 kb on + strand at 472.862 kb on + strand at 472.911 kb on - strand at 472.911 kb on - strand at 472.965 kb on + strand at 473.003 kb on + strand at 473.008 kb on - strand at 473.095 kb on - strand at 473.167 kb on - strand at 473.167 kb on - strand at 473.168 kb on + strand at 473.213 kb on + strand at 473.379 kb on - strand at 473.445 kb on + strand at 473.450 kb on - strand at 473.460 kb on - strand at 473.650 kb on + strand at 473.754 kb on - strand, within MMP_RS02530 at 473.755 kb on + strand, within MMP_RS02530 at 473.776 kb on + strand, within MMP_RS02530 at 473.787 kb on - strand, within MMP_RS02530 at 473.787 kb on - strand, within MMP_RS02530 at 473.787 kb on - strand, within MMP_RS02530 at 473.788 kb on + strand, within MMP_RS02530 at 473.789 kb on - strand, within MMP_RS02530 at 473.838 kb on - strand, within MMP_RS02530 at 473.948 kb on + strand, within MMP_RS02530
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 470,200 - +0.5 470,212 - -0.3 470,216 - -0.5 470,267 - -1.1 470,270 - +0.7 470,277 - +1.4 470,277 - -1.2 470,278 + +2.2 470,278 + +2.6 470,298 - MMP_RS02520 0.12 +0.1 470,299 + MMP_RS02520 0.12 -1.3 470,299 + MMP_RS02520 0.12 +0.4 470,299 + MMP_RS02520 0.12 +1.2 470,299 + MMP_RS02520 0.12 +0.0 470,299 + MMP_RS02520 0.12 +0.3 470,304 + MMP_RS02520 0.13 -0.2 470,304 + MMP_RS02520 0.13 +2.8 470,308 + MMP_RS02520 0.13 -1.7 470,363 + MMP_RS02520 0.20 -2.3 470,377 - MMP_RS02520 0.22 -1.1 470,377 - MMP_RS02520 0.22 +1.2 470,377 - MMP_RS02520 0.22 +3.1 470,377 - MMP_RS02520 0.22 -0.2 470,428 - MMP_RS02520 0.28 -0.6 470,441 - MMP_RS02520 0.30 -2.6 470,441 - MMP_RS02520 0.30 +1.6 470,447 - MMP_RS02520 0.30 -0.8 470,450 + MMP_RS02520 0.31 -0.9 470,474 + MMP_RS02520 0.34 +0.2 470,487 + MMP_RS02520 0.35 +1.8 470,499 + MMP_RS02520 0.37 -1.0 470,576 + MMP_RS02520 0.46 -0.1 470,582 - MMP_RS02520 0.47 +0.3 470,582 - MMP_RS02520 0.47 -1.1 470,587 - MMP_RS02520 0.48 +0.1 470,655 + MMP_RS02520 0.56 +0.7 470,662 - MMP_RS02520 0.57 -1.4 470,692 - MMP_RS02520 0.61 -0.2 470,764 - MMP_RS02520 0.70 -0.3 470,765 + MMP_RS02520 0.70 +0.4 470,913 + MMP_RS02520 0.88 +1.2 470,913 + MMP_RS02520 0.88 +0.9 470,965 - +0.4 470,965 - -0.4 470,971 - -0.4 470,971 - +0.2 470,971 - -1.9 470,998 - +3.2 470,998 - +0.7 470,999 + +1.0 470,999 + -1.1 471,050 - -0.7 471,120 + +0.3 471,121 - +3.1 471,314 - +2.9 471,314 - +0.8 471,315 + -0.8 471,315 + +1.0 471,315 + +0.3 471,316 - +1.3 471,413 + MMP_RS02525 0.15 -0.2 471,502 - MMP_RS02525 0.19 +0.8 471,502 - MMP_RS02525 0.19 +0.6 471,527 + MMP_RS02525 0.21 +0.8 471,537 - MMP_RS02525 0.21 +0.1 471,600 - MMP_RS02525 0.25 +0.4 471,693 + MMP_RS02525 0.30 +2.1 471,751 + MMP_RS02525 0.33 +0.8 471,776 + MMP_RS02525 0.34 +1.4 471,779 + MMP_RS02525 0.35 +1.0 471,780 - MMP_RS02525 0.35 +1.2 471,781 + MMP_RS02525 0.35 -0.4 471,817 - MMP_RS02525 0.37 -0.4 471,840 - MMP_RS02525 0.38 +1.0 471,885 - MMP_RS02525 0.40 +0.9 471,885 - MMP_RS02525 0.40 +0.4 471,887 - MMP_RS02525 0.40 -2.3 471,904 - MMP_RS02525 0.41 -0.5 471,905 + MMP_RS02525 0.41 -0.7 471,907 - MMP_RS02525 0.41 +1.3 471,908 + MMP_RS02525 0.42 -0.1 471,915 + MMP_RS02525 0.42 +1.6 471,919 - MMP_RS02525 0.42 -1.3 471,919 - MMP_RS02525 0.42 -0.4 471,922 + MMP_RS02525 0.42 -0.8 471,926 - MMP_RS02525 0.43 +1.3 471,927 + MMP_RS02525 0.43 +0.7 471,931 + MMP_RS02525 0.43 +1.9 471,990 + MMP_RS02525 0.46 -1.1 471,990 + MMP_RS02525 0.46 +0.3 471,990 + MMP_RS02525 0.46 -0.8 472,013 + MMP_RS02525 0.47 -0.2 472,013 + MMP_RS02525 0.47 -0.2 472,013 + MMP_RS02525 0.47 +0.8 472,015 + MMP_RS02525 0.47 -0.1 472,046 - MMP_RS02525 0.49 -0.6 472,070 + MMP_RS02525 0.50 +1.2 472,130 + MMP_RS02525 0.54 -0.3 472,133 - MMP_RS02525 0.54 +1.3 472,133 - MMP_RS02525 0.54 +0.3 472,136 - MMP_RS02525 0.54 -0.2 472,153 - MMP_RS02525 0.55 +0.3 472,158 - MMP_RS02525 0.55 +0.6 472,161 + MMP_RS02525 0.55 -0.1 472,177 - MMP_RS02525 0.56 +1.3 472,186 - MMP_RS02525 0.57 +0.8 472,453 - MMP_RS02525 0.71 -0.8 472,456 - MMP_RS02525 0.71 +0.7 472,517 - MMP_RS02525 0.75 -0.5 472,580 - MMP_RS02525 0.78 +0.7 472,654 - MMP_RS02525 0.82 +0.3 472,655 + MMP_RS02525 0.82 +0.0 472,656 - MMP_RS02525 0.82 -0.5 472,656 - MMP_RS02525 0.82 +0.4 472,657 + MMP_RS02525 0.82 +0.8 472,659 + MMP_RS02525 0.82 +1.1 472,659 + MMP_RS02525 0.82 +1.2 472,659 + MMP_RS02525 0.82 -1.0 472,659 + MMP_RS02525 0.82 +0.1 472,661 - MMP_RS02525 0.82 -0.4 472,773 + MMP_RS02525 0.88 +0.9 472,831 + -0.4 472,837 - -0.8 472,862 + -1.6 472,862 + +2.1 472,862 + +1.0 472,911 - -1.1 472,911 - +0.0 472,965 + -0.2 473,003 + -0.1 473,008 - +0.6 473,095 - -0.6 473,167 - -0.7 473,167 - +0.1 473,168 + -0.3 473,213 + +0.3 473,379 - -1.2 473,445 + -0.6 473,450 - +4.3 473,460 - -0.8 473,650 + -0.5 473,754 - MMP_RS02530 0.12 +0.4 473,755 + MMP_RS02530 0.13 -1.2 473,776 + MMP_RS02530 0.19 +0.2 473,787 - MMP_RS02530 0.23 -1.3 473,787 - MMP_RS02530 0.23 -0.4 473,787 - MMP_RS02530 0.23 +1.8 473,788 + MMP_RS02530 0.23 +0.1 473,789 - MMP_RS02530 0.24 -1.7 473,838 - MMP_RS02530 0.40 -0.6 473,948 + MMP_RS02530 0.76 +0.9
Or see this region's nucleotide sequence