Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02400 and MMP_RS02405 are separated by 127 nucleotides MMP_RS02405 and MMP_RS02410 are separated by 115 nucleotides MMP_RS02410 and MMP_RS02415 are separated by 103 nucleotides
MMP_RS02400: MMP_RS02400 - site-2 protease family protein, at 445,925 to 446,938
_RS02400
MMP_RS02405: MMP_RS02405 - hypothetical protein, at 447,066 to 447,587
_RS02405
MMP_RS02410: MMP_RS02410 - ABC transporter substrate-binding protein, at 447,703 to 448,449
_RS02410
MMP_RS02415: MMP_RS02415 - site-specific integrase, at 448,553 to 449,101
_RS02415
Position (kb) 447
448
449 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 446.775 kb on - strand, within MMP_RS02400 at 446.776 kb on + strand, within MMP_RS02400 at 446.824 kb on + strand, within MMP_RS02400 at 446.877 kb on + strand at 446.962 kb on - strand at 446.962 kb on - strand at 446.962 kb on - strand at 446.962 kb on - strand at 446.963 kb on + strand at 446.963 kb on + strand at 446.963 kb on + strand at 446.965 kb on - strand at 446.965 kb on - strand at 446.965 kb on - strand at 446.966 kb on + strand at 446.966 kb on + strand at 446.968 kb on + strand at 446.968 kb on + strand at 446.988 kb on + strand at 447.006 kb on - strand at 447.007 kb on + strand at 447.007 kb on + strand at 447.010 kb on - strand at 447.010 kb on - strand at 447.010 kb on - strand at 447.010 kb on - strand at 447.020 kb on + strand at 447.050 kb on - strand at 447.051 kb on + strand at 447.085 kb on - strand at 447.085 kb on - strand at 447.085 kb on - strand at 447.366 kb on - strand, within MMP_RS02405 at 447.366 kb on - strand, within MMP_RS02405 at 447.367 kb on + strand, within MMP_RS02405 at 447.367 kb on + strand, within MMP_RS02405 at 447.369 kb on + strand, within MMP_RS02405 at 447.415 kb on + strand, within MMP_RS02405 at 447.472 kb on - strand, within MMP_RS02405 at 447.601 kb on - strand at 447.601 kb on - strand at 447.642 kb on + strand at 447.738 kb on + strand at 447.837 kb on - strand, within MMP_RS02410 at 448.088 kb on + strand, within MMP_RS02410 at 448.362 kb on - strand, within MMP_RS02410 at 448.392 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand at 448.947 kb on + strand, within MMP_RS02415 at 448.968 kb on + strand, within MMP_RS02415
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 446,775 - MMP_RS02400 0.84 +1.6 446,776 + MMP_RS02400 0.84 -2.2 446,824 + MMP_RS02400 0.89 +0.6 446,877 + +1.0 446,962 - -0.6 446,962 - +3.7 446,962 - +0.3 446,962 - +3.1 446,963 + +3.6 446,963 + -0.2 446,963 + -0.9 446,965 - -0.7 446,965 - -0.1 446,965 - -1.1 446,966 + +0.1 446,966 + +0.1 446,968 + +0.8 446,968 + -1.0 446,988 + +0.3 447,006 - +0.2 447,007 + +0.2 447,007 + +0.9 447,010 - +0.2 447,010 - -1.3 447,010 - -0.3 447,010 - +0.5 447,020 + +2.4 447,050 - -4.9 447,051 + -1.2 447,085 - +0.7 447,085 - +0.0 447,085 - +1.1 447,366 - MMP_RS02405 0.57 -0.3 447,366 - MMP_RS02405 0.57 +0.7 447,367 + MMP_RS02405 0.58 -1.3 447,367 + MMP_RS02405 0.58 -1.4 447,369 + MMP_RS02405 0.58 -0.9 447,415 + MMP_RS02405 0.67 +0.2 447,472 - MMP_RS02405 0.78 +0.8 447,601 - +1.7 447,601 - -1.8 447,642 + -0.5 447,738 + -0.0 447,837 - MMP_RS02410 0.18 -0.2 448,088 + MMP_RS02410 0.52 -0.3 448,362 - MMP_RS02410 0.88 +1.3 448,392 - +1.1 448,483 - +0.9 448,483 - -1.2 448,483 - +1.5 448,947 + MMP_RS02415 0.72 +0.7 448,968 + MMP_RS02415 0.76 +0.9
Or see this region's nucleotide sequence