Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02235 and MMP_RS02240 are separated by 17 nucleotides MMP_RS02240 and MMP_RS02245 are separated by 30 nucleotides MMP_RS02245 and MMP_RS02250 are separated by 132 nucleotides
MMP_RS02235: MMP_RS02235 - CBS domain-containing protein, at 422,287 to 423,252
_RS02235
MMP_RS02240: MMP_RS02240 - methanogenesis marker 7 protein, at 423,270 to 424,184
_RS02240
MMP_RS02245: MMP_RS02245 - hypothetical protein, at 424,215 to 424,667
_RS02245
MMP_RS02250: MMP_RS02250 - FRG domain-containing protein, at 424,800 to 426,188
_RS02250
Position (kb) 424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 423.282 kb on + strand at 423.282 kb on + strand at 423.284 kb on - strand at 423.285 kb on + strand at 423.445 kb on + strand, within MMP_RS02240 at 423.777 kb on - strand, within MMP_RS02240 at 423.885 kb on + strand, within MMP_RS02240 at 423.959 kb on + strand, within MMP_RS02240 at 423.959 kb on + strand, within MMP_RS02240 at 424.077 kb on - strand, within MMP_RS02240 at 424.098 kb on - strand at 424.099 kb on + strand at 424.104 kb on + strand at 424.183 kb on + strand at 424.426 kb on - strand, within MMP_RS02245 at 424.427 kb on + strand, within MMP_RS02245 at 424.435 kb on + strand, within MMP_RS02245 at 424.511 kb on - strand, within MMP_RS02245 at 424.517 kb on + strand, within MMP_RS02245 at 424.657 kb on - strand at 424.657 kb on - strand at 424.657 kb on - strand at 424.659 kb on - strand at 424.744 kb on - strand at 424.745 kb on + strand at 425.010 kb on + strand, within MMP_RS02250 at 425.092 kb on - strand, within MMP_RS02250 at 425.128 kb on - strand, within MMP_RS02250 at 425.145 kb on + strand, within MMP_RS02250 at 425.165 kb on - strand, within MMP_RS02250 at 425.166 kb on + strand, within MMP_RS02250 at 425.204 kb on - strand, within MMP_RS02250 at 425.204 kb on - strand, within MMP_RS02250 at 425.209 kb on + strand, within MMP_RS02250 at 425.262 kb on + strand, within MMP_RS02250 at 425.264 kb on + strand, within MMP_RS02250 at 425.266 kb on - strand, within MMP_RS02250 at 425.266 kb on - strand, within MMP_RS02250 at 425.267 kb on + strand, within MMP_RS02250 at 425.279 kb on + strand, within MMP_RS02250 at 425.279 kb on + strand, within MMP_RS02250 at 425.283 kb on + strand, within MMP_RS02250 at 425.372 kb on + strand, within MMP_RS02250 at 425.401 kb on + strand, within MMP_RS02250 at 425.472 kb on + strand, within MMP_RS02250 at 425.477 kb on + strand, within MMP_RS02250 at 425.481 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.530 kb on - strand, within MMP_RS02250 at 425.530 kb on - strand, within MMP_RS02250 at 425.556 kb on + strand, within MMP_RS02250
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 423,282 + -1.4 423,282 + -2.4 423,284 - -3.5 423,285 + -1.5 423,445 + MMP_RS02240 0.19 -3.5 423,777 - MMP_RS02240 0.55 -3.3 423,885 + MMP_RS02240 0.67 -3.2 423,959 + MMP_RS02240 0.75 -3.3 423,959 + MMP_RS02240 0.75 -1.3 424,077 - MMP_RS02240 0.88 -1.4 424,098 - -1.5 424,099 + -3.1 424,104 + -2.2 424,183 + +0.4 424,426 - MMP_RS02245 0.47 -2.1 424,427 + MMP_RS02245 0.47 -0.3 424,435 + MMP_RS02245 0.49 -0.8 424,511 - MMP_RS02245 0.65 -1.5 424,517 + MMP_RS02245 0.67 -1.7 424,657 - -0.0 424,657 - +0.3 424,657 - -1.3 424,659 - -0.4 424,744 - +3.5 424,745 + +2.6 425,010 + MMP_RS02250 0.15 +1.5 425,092 - MMP_RS02250 0.21 +0.0 425,128 - MMP_RS02250 0.24 +0.6 425,145 + MMP_RS02250 0.25 -1.1 425,165 - MMP_RS02250 0.26 -0.4 425,166 + MMP_RS02250 0.26 +0.4 425,204 - MMP_RS02250 0.29 +1.1 425,204 - MMP_RS02250 0.29 +1.9 425,209 + MMP_RS02250 0.29 +1.3 425,262 + MMP_RS02250 0.33 -0.3 425,264 + MMP_RS02250 0.33 -0.7 425,266 - MMP_RS02250 0.34 +0.3 425,266 - MMP_RS02250 0.34 +0.2 425,267 + MMP_RS02250 0.34 +0.9 425,279 + MMP_RS02250 0.34 -2.4 425,279 + MMP_RS02250 0.34 -0.2 425,283 + MMP_RS02250 0.35 -0.7 425,372 + MMP_RS02250 0.41 +0.3 425,401 + MMP_RS02250 0.43 -1.6 425,472 + MMP_RS02250 0.48 +1.9 425,477 + MMP_RS02250 0.49 -1.3 425,481 - MMP_RS02250 0.49 +0.9 425,525 - MMP_RS02250 0.52 +0.5 425,525 - MMP_RS02250 0.52 +0.7 425,525 - MMP_RS02250 0.52 +1.5 425,530 - MMP_RS02250 0.53 -0.5 425,530 - MMP_RS02250 0.53 -1.4 425,556 + MMP_RS02250 0.54 +0.1
Or see this region's nucleotide sequence