Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02005 and MMP_RS02010 are separated by 5 nucleotides MMP_RS02010 and MMP_RS02015 are separated by 28 nucleotides MMP_RS02015 and MMP_RS02020 are separated by 5 nucleotides MMP_RS02020 and MMP_RS02025 are separated by 4 nucleotides
MMP_RS02005: MMP_RS02005 - RNA ligase, at 373,010 to 374,194
_RS02005
MMP_RS02010: MMP_RS02010 - PHP domain-containing protein, at 374,200 to 374,844
_RS02010
MMP_RS02015: MMP_RS02015 - amidohydrolase, at 374,873 to 376,156
_RS02015
MMP_RS02020: MMP_RS02020 - gamma-glutamylcyclotransferase, at 376,162 to 376,485
_RS02020
MMP_RS02025: MMP_RS02025 - DNA-directed DNA polymerase, at 376,490 to 378,844
_RS02025
Position (kb) 374
375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 374.061 kb on - strand, within MMP_RS02005 at 374.141 kb on - strand at 374.181 kb on - strand at 374.472 kb on - strand, within MMP_RS02010 at 374.474 kb on - strand, within MMP_RS02010 at 374.475 kb on + strand, within MMP_RS02010 at 374.476 kb on - strand, within MMP_RS02010 at 374.477 kb on + strand, within MMP_RS02010 at 374.485 kb on - strand, within MMP_RS02010 at 374.487 kb on - strand, within MMP_RS02010 at 374.492 kb on + strand, within MMP_RS02010 at 374.532 kb on - strand, within MMP_RS02010 at 374.576 kb on - strand, within MMP_RS02010 at 374.577 kb on + strand, within MMP_RS02010 at 374.599 kb on - strand, within MMP_RS02010 at 374.599 kb on - strand, within MMP_RS02010 at 374.698 kb on - strand, within MMP_RS02010 at 374.869 kb on - strand at 374.875 kb on + strand at 374.902 kb on - strand at 374.914 kb on - strand at 374.918 kb on + strand at 374.921 kb on - strand at 374.943 kb on - strand at 374.963 kb on - strand at 374.965 kb on - strand at 374.982 kb on + strand at 375.019 kb on - strand, within MMP_RS02015 at 375.038 kb on + strand, within MMP_RS02015 at 375.074 kb on - strand, within MMP_RS02015 at 375.077 kb on + strand, within MMP_RS02015 at 375.479 kb on - strand, within MMP_RS02015 at 375.480 kb on + strand, within MMP_RS02015 at 375.518 kb on - strand, within MMP_RS02015 at 375.626 kb on + strand, within MMP_RS02015 at 375.665 kb on - strand, within MMP_RS02015 at 375.667 kb on - strand, within MMP_RS02015 at 375.835 kb on + strand, within MMP_RS02015 at 376.049 kb on + strand at 376.127 kb on + strand at 376.131 kb on - strand at 376.132 kb on + strand at 376.179 kb on + strand at 376.221 kb on - strand, within MMP_RS02020 at 376.300 kb on - strand, within MMP_RS02020 at 376.318 kb on + strand, within MMP_RS02020 at 376.385 kb on - strand, within MMP_RS02020 at 376.479 kb on + strand at 376.568 kb on - strand at 376.679 kb on - strand at 376.682 kb on + strand at 376.682 kb on + strand at 376.691 kb on - strand at 376.691 kb on - strand at 376.691 kb on - strand at 376.730 kb on - strand, within MMP_RS02025 at 376.768 kb on - strand, within MMP_RS02025 at 376.789 kb on - strand, within MMP_RS02025 at 376.974 kb on + strand, within MMP_RS02025
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 374,061 - MMP_RS02005 0.89 +2.1 374,141 - -1.3 374,181 - -3.0 374,472 - MMP_RS02010 0.42 -1.6 374,474 - MMP_RS02010 0.42 +3.7 374,475 + MMP_RS02010 0.43 +0.4 374,476 - MMP_RS02010 0.43 +5.2 374,477 + MMP_RS02010 0.43 -1.8 374,485 - MMP_RS02010 0.44 +1.9 374,487 - MMP_RS02010 0.44 +3.6 374,492 + MMP_RS02010 0.45 -1.4 374,532 - MMP_RS02010 0.51 +0.1 374,576 - MMP_RS02010 0.58 -1.5 374,577 + MMP_RS02010 0.58 -1.0 374,599 - MMP_RS02010 0.62 -0.9 374,599 - MMP_RS02010 0.62 +0.7 374,698 - MMP_RS02010 0.77 +0.8 374,869 - -0.0 374,875 + +5.1 374,902 - -2.2 374,914 - +0.1 374,918 + -1.6 374,921 - +0.8 374,943 - +2.3 374,963 - +1.1 374,965 - +4.0 374,982 + +1.4 375,019 - MMP_RS02015 0.11 -0.1 375,038 + MMP_RS02015 0.13 -0.3 375,074 - MMP_RS02015 0.16 +1.5 375,077 + MMP_RS02015 0.16 +0.1 375,479 - MMP_RS02015 0.47 +0.8 375,480 + MMP_RS02015 0.47 -2.4 375,518 - MMP_RS02015 0.50 +0.3 375,626 + MMP_RS02015 0.59 +1.3 375,665 - MMP_RS02015 0.62 +0.0 375,667 - MMP_RS02015 0.62 -1.4 375,835 + MMP_RS02015 0.75 +0.5 376,049 + +1.2 376,127 + +0.1 376,131 - -0.4 376,132 + -0.9 376,179 + +1.3 376,221 - MMP_RS02020 0.18 +0.8 376,300 - MMP_RS02020 0.43 -0.2 376,318 + MMP_RS02020 0.48 -1.8 376,385 - MMP_RS02020 0.69 +0.3 376,479 + -0.9 376,568 - -0.6 376,679 - +0.4 376,682 + +0.8 376,682 + -1.4 376,691 - +0.8 376,691 - +1.9 376,691 - -0.0 376,730 - MMP_RS02025 0.10 -1.9 376,768 - MMP_RS02025 0.12 +0.7 376,789 - MMP_RS02025 0.13 +0.5 376,974 + MMP_RS02025 0.21 +0.8
Or see this region's nucleotide sequence