Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01890

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01880 and MMP_RS01885 overlap by 1 nucleotidesMMP_RS01885 and MMP_RS01890 are separated by 17 nucleotidesMMP_RS01890 and MMP_RS01895 are separated by 23 nucleotides MMP_RS01880: MMP_RS01880 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 346,412 to 347,515 _RS01880 MMP_RS01885: MMP_RS01885 - Gfo/Idh/MocA family oxidoreductase, at 347,515 to 348,450 _RS01885 MMP_RS01890: MMP_RS01890 - nucleotide sugar dehydrogenase, at 348,468 to 349,775 _RS01890 MMP_RS01895: MMP_RS01895 - flippase, at 349,799 to 351,034 _RS01895 Position (kb) 348 349 350Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 347.474 kb on - strandat 347.475 kb on + strandat 347.477 kb on + strandat 347.510 kb on + strandat 347.683 kb on - strand, within MMP_RS01885at 347.685 kb on - strand, within MMP_RS01885at 347.760 kb on + strand, within MMP_RS01885at 347.792 kb on - strand, within MMP_RS01885at 347.892 kb on - strand, within MMP_RS01885at 347.914 kb on + strand, within MMP_RS01885at 348.070 kb on + strand, within MMP_RS01885at 348.156 kb on - strand, within MMP_RS01885at 348.161 kb on - strand, within MMP_RS01885at 348.161 kb on - strand, within MMP_RS01885at 348.162 kb on + strand, within MMP_RS01885at 348.162 kb on + strand, within MMP_RS01885at 348.162 kb on + strand, within MMP_RS01885at 348.181 kb on + strand, within MMP_RS01885at 348.183 kb on - strand, within MMP_RS01885at 348.184 kb on + strand, within MMP_RS01885at 348.184 kb on + strand, within MMP_RS01885at 348.213 kb on + strand, within MMP_RS01885at 348.217 kb on + strand, within MMP_RS01885at 348.241 kb on - strand, within MMP_RS01885at 348.273 kb on + strand, within MMP_RS01885at 348.274 kb on - strand, within MMP_RS01885at 348.275 kb on + strand, within MMP_RS01885at 348.557 kb on - strandat 348.563 kb on + strandat 348.724 kb on - strand, within MMP_RS01890at 348.725 kb on + strand, within MMP_RS01890at 348.771 kb on + strand, within MMP_RS01890at 348.775 kb on - strand, within MMP_RS01890at 348.971 kb on - strand, within MMP_RS01890at 349.041 kb on - strand, within MMP_RS01890at 349.268 kb on - strand, within MMP_RS01890at 349.294 kb on - strand, within MMP_RS01890at 349.370 kb on + strand, within MMP_RS01890at 349.384 kb on - strand, within MMP_RS01890at 349.586 kb on + strand, within MMP_RS01890at 349.691 kb on + strandat 349.709 kb on - strandat 349.709 kb on - strandat 349.710 kb on + strandat 349.713 kb on + strandat 349.754 kb on - strandat 349.754 kb on - strandat 349.774 kb on + strandat 349.825 kb on - strandat 349.862 kb on + strandat 349.867 kb on - strandat 349.888 kb on + strandat 349.939 kb on + strand, within MMP_RS01895at 350.028 kb on + strand, within MMP_RS01895at 350.035 kb on - strand, within MMP_RS01895at 350.035 kb on - strand, within MMP_RS01895at 350.035 kb on - strand, within MMP_RS01895at 350.036 kb on + strand, within MMP_RS01895at 350.094 kb on - strand, within MMP_RS01895at 350.132 kb on + strand, within MMP_RS01895at 350.151 kb on + strand, within MMP_RS01895at 350.233 kb on - strand, within MMP_RS01895at 350.233 kb on - strand, within MMP_RS01895at 350.233 kb on - strand, within MMP_RS01895at 350.233 kb on - strand, within MMP_RS01895at 350.234 kb on + strand, within MMP_RS01895at 350.234 kb on + strand, within MMP_RS01895at 350.236 kb on + strand, within MMP_RS01895at 350.239 kb on - strand, within MMP_RS01895at 350.239 kb on - strand, within MMP_RS01895at 350.240 kb on + strand, within MMP_RS01895at 350.240 kb on + strand, within MMP_RS01895at 350.257 kb on + strand, within MMP_RS01895at 350.261 kb on + strand, within MMP_RS01895at 350.326 kb on - strand, within MMP_RS01895at 350.327 kb on + strand, within MMP_RS01895at 350.356 kb on - strand, within MMP_RS01895at 350.360 kb on - strand, within MMP_RS01895at 350.362 kb on - strand, within MMP_RS01895at 350.362 kb on - strand, within MMP_RS01895at 350.363 kb on + strand, within MMP_RS01895at 350.363 kb on + strand, within MMP_RS01895at 350.363 kb on + strand, within MMP_RS01895at 350.363 kb on + strand, within MMP_RS01895at 350.366 kb on - strand, within MMP_RS01895at 350.367 kb on + strand, within MMP_RS01895at 350.367 kb on + strand, within MMP_RS01895at 350.378 kb on - strand, within MMP_RS01895at 350.422 kb on - strand, within MMP_RS01895at 350.456 kb on - strand, within MMP_RS01895at 350.456 kb on - strand, within MMP_RS01895at 350.456 kb on - strand, within MMP_RS01895at 350.457 kb on + strand, within MMP_RS01895at 350.460 kb on - strand, within MMP_RS01895at 350.470 kb on - strand, within MMP_RS01895at 350.474 kb on - strand, within MMP_RS01895at 350.477 kb on - strand, within MMP_RS01895at 350.477 kb on - strand, within MMP_RS01895at 350.489 kb on + strand, within MMP_RS01895at 350.532 kb on - strand, within MMP_RS01895at 350.533 kb on + strand, within MMP_RS01895at 350.546 kb on - strand, within MMP_RS01895at 350.571 kb on - strand, within MMP_RS01895at 350.587 kb on + strand, within MMP_RS01895at 350.589 kb on - strand, within MMP_RS01895at 350.589 kb on - strand, within MMP_RS01895at 350.590 kb on + strand, within MMP_RS01895at 350.657 kb on + strand, within MMP_RS01895at 350.668 kb on - strand, within MMP_RS01895

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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347,474 - -2.8
347,475 + +3.1
347,477 + -3.6
347,510 + +0.7
347,683 - MMP_RS01885 0.18 -2.8
347,685 - MMP_RS01885 0.18 -1.4
347,760 + MMP_RS01885 0.26 -1.3
347,792 - MMP_RS01885 0.30 -1.7
347,892 - MMP_RS01885 0.40 -2.4
347,914 + MMP_RS01885 0.43 -0.7
348,070 + MMP_RS01885 0.59 -2.5
348,156 - MMP_RS01885 0.68 -1.8
348,161 - MMP_RS01885 0.69 -2.8
348,161 - MMP_RS01885 0.69 -2.5
348,162 + MMP_RS01885 0.69 -1.1
348,162 + MMP_RS01885 0.69 -0.4
348,162 + MMP_RS01885 0.69 -3.1
348,181 + MMP_RS01885 0.71 -3.3
348,183 - MMP_RS01885 0.71 +1.3
348,184 + MMP_RS01885 0.71 -3.2
348,184 + MMP_RS01885 0.71 -3.6
348,213 + MMP_RS01885 0.75 -2.2
348,217 + MMP_RS01885 0.75 -2.2
348,241 - MMP_RS01885 0.78 -1.5
348,273 + MMP_RS01885 0.81 +0.5
348,274 - MMP_RS01885 0.81 -2.1
348,275 + MMP_RS01885 0.81 -0.7
348,557 - -2.8
348,563 + -3.4
348,724 - MMP_RS01890 0.20 -2.4
348,725 + MMP_RS01890 0.20 -0.7
348,771 + MMP_RS01890 0.23 -1.6
348,775 - MMP_RS01890 0.23 +1.8
348,971 - MMP_RS01890 0.38 -1.8
349,041 - MMP_RS01890 0.44 -3.4
349,268 - MMP_RS01890 0.61 -2.2
349,294 - MMP_RS01890 0.63 -2.5
349,370 + MMP_RS01890 0.69 -2.0
349,384 - MMP_RS01890 0.70 -2.3
349,586 + MMP_RS01890 0.85 -2.3
349,691 + -3.1
349,709 - -2.2
349,709 - -1.5
349,710 + -0.9
349,713 + -2.3
349,754 - +0.3
349,754 - -2.4
349,774 + +3.5
349,825 - +0.6
349,862 + -1.3
349,867 - -2.3
349,888 + -2.6
349,939 + MMP_RS01895 0.11 -0.2
350,028 + MMP_RS01895 0.19 -3.5
350,035 - MMP_RS01895 0.19 -2.0
350,035 - MMP_RS01895 0.19 -1.2
350,035 - MMP_RS01895 0.19 -0.8
350,036 + MMP_RS01895 0.19 -2.0
350,094 - MMP_RS01895 0.24 -1.1
350,132 + MMP_RS01895 0.27 -0.8
350,151 + MMP_RS01895 0.28 -0.4
350,233 - MMP_RS01895 0.35 -3.2
350,233 - MMP_RS01895 0.35 -0.2
350,233 - MMP_RS01895 0.35 -4.6
350,233 - MMP_RS01895 0.35 -3.3
350,234 + MMP_RS01895 0.35 -1.4
350,234 + MMP_RS01895 0.35 -1.0
350,236 + MMP_RS01895 0.35 -0.7
350,239 - MMP_RS01895 0.36 -2.9
350,239 - MMP_RS01895 0.36 -1.2
350,240 + MMP_RS01895 0.36 -2.1
350,240 + MMP_RS01895 0.36 +0.3
350,257 + MMP_RS01895 0.37 -2.9
350,261 + MMP_RS01895 0.37 -2.0
350,326 - MMP_RS01895 0.43 -1.7
350,327 + MMP_RS01895 0.43 -2.0
350,356 - MMP_RS01895 0.45 -0.4
350,360 - MMP_RS01895 0.45 +3.0
350,362 - MMP_RS01895 0.46 -2.4
350,362 - MMP_RS01895 0.46 -3.1
350,363 + MMP_RS01895 0.46 -1.0
350,363 + MMP_RS01895 0.46 -2.4
350,363 + MMP_RS01895 0.46 -2.3
350,363 + MMP_RS01895 0.46 -1.2
350,366 - MMP_RS01895 0.46 -2.1
350,367 + MMP_RS01895 0.46 -2.0
350,367 + MMP_RS01895 0.46 -0.1
350,378 - MMP_RS01895 0.47 -0.3
350,422 - MMP_RS01895 0.50 -1.4
350,456 - MMP_RS01895 0.53 -2.4
350,456 - MMP_RS01895 0.53 +1.2
350,456 - MMP_RS01895 0.53 -2.1
350,457 + MMP_RS01895 0.53 +0.3
350,460 - MMP_RS01895 0.53 -1.6
350,470 - MMP_RS01895 0.54 -0.5
350,474 - MMP_RS01895 0.55 -0.4
350,477 - MMP_RS01895 0.55 -0.6
350,477 - MMP_RS01895 0.55 -1.0
350,489 + MMP_RS01895 0.56 -3.1
350,532 - MMP_RS01895 0.59 -0.0
350,533 + MMP_RS01895 0.59 -1.7
350,546 - MMP_RS01895 0.60 -4.4
350,571 - MMP_RS01895 0.62 -3.4
350,587 + MMP_RS01895 0.64 -1.9
350,589 - MMP_RS01895 0.64 +0.3
350,589 - MMP_RS01895 0.64 -1.3
350,590 + MMP_RS01895 0.64 -1.2
350,657 + MMP_RS01895 0.69 +0.8
350,668 - MMP_RS01895 0.70 -2.6

Or see this region's nucleotide sequence