Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01870

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01860 and MMP_RS01865 are separated by 90 nucleotidesMMP_RS01865 and MMP_RS01870 are separated by 126 nucleotidesMMP_RS01870 and MMP_RS01875 are separated by 140 nucleotidesMMP_RS01875 and MMP_RS01880 are separated by 1 nucleotides MMP_RS01860: MMP_RS01860 - hypothetical protein, at 343,814 to 344,128 _RS01860 MMP_RS01865: MMP_RS01865 - GPR1/FUN34/YaaH family transporter, at 344,219 to 344,812 _RS01865 MMP_RS01870: MMP_RS01870 - acyl-CoA dehydratase activase, at 344,939 to 345,679 _RS01870 MMP_RS01875: MMP_RS01875 - N-acetyltransferase, at 345,820 to 346,410 _RS01875 MMP_RS01880: MMP_RS01880 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 346,412 to 347,515 _RS01880 Position (kb) 344 345 346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 343.992 kb on + strand, within MMP_RS01860at 344.004 kb on - strand, within MMP_RS01860at 344.023 kb on - strand, within MMP_RS01860at 344.096 kb on - strand, within MMP_RS01860at 344.099 kb on + strandat 344.103 kb on + strandat 344.115 kb on + strandat 344.128 kb on - strandat 344.182 kb on - strandat 344.182 kb on - strandat 344.182 kb on - strandat 344.183 kb on + strandat 344.184 kb on - strandat 344.184 kb on - strandat 344.185 kb on + strandat 344.186 kb on - strandat 344.187 kb on + strandat 344.187 kb on + strandat 344.388 kb on + strand, within MMP_RS01865at 344.790 kb on + strandat 344.819 kb on + strandat 344.856 kb on - strandat 344.858 kb on - strandat 344.858 kb on - strandat 344.858 kb on - strandat 344.858 kb on - strandat 344.859 kb on + strandat 344.859 kb on + strandat 344.860 kb on - strandat 344.860 kb on - strandat 344.860 kb on - strandat 344.860 kb on - strandat 344.861 kb on + strandat 344.861 kb on + strandat 344.873 kb on + strandat 344.884 kb on - strandat 344.910 kb on - strandat 344.913 kb on + strandat 344.924 kb on + strandat 345.036 kb on + strand, within MMP_RS01870at 345.078 kb on + strand, within MMP_RS01870at 345.139 kb on + strand, within MMP_RS01870at 345.140 kb on - strand, within MMP_RS01870at 345.141 kb on + strand, within MMP_RS01870at 345.289 kb on - strand, within MMP_RS01870at 345.372 kb on + strand, within MMP_RS01870at 345.372 kb on + strand, within MMP_RS01870at 345.485 kb on - strand, within MMP_RS01870at 345.560 kb on - strand, within MMP_RS01870at 345.605 kb on + strand, within MMP_RS01870at 345.614 kb on - strandat 345.671 kb on - strandat 345.729 kb on - strandat 345.735 kb on - strandat 345.739 kb on - strandat 345.739 kb on - strandat 345.740 kb on + strandat 345.743 kb on - strandat 345.756 kb on + strandat 345.757 kb on - strandat 345.774 kb on - strandat 345.774 kb on - strandat 345.774 kb on - strandat 345.775 kb on + strandat 345.775 kb on + strandat 345.783 kb on - strandat 345.789 kb on + strandat 345.816 kb on + strandat 345.826 kb on + strandat 345.829 kb on - strandat 345.883 kb on + strand, within MMP_RS01875at 345.958 kb on - strand, within MMP_RS01875at 345.958 kb on - strand, within MMP_RS01875at 345.959 kb on + strand, within MMP_RS01875at 345.959 kb on + strand, within MMP_RS01875at 345.959 kb on + strand, within MMP_RS01875at 345.960 kb on - strand, within MMP_RS01875at 345.961 kb on + strand, within MMP_RS01875at 345.962 kb on - strand, within MMP_RS01875at 345.962 kb on - strand, within MMP_RS01875at 345.962 kb on - strand, within MMP_RS01875at 345.963 kb on + strand, within MMP_RS01875at 345.963 kb on + strand, within MMP_RS01875at 345.967 kb on + strand, within MMP_RS01875at 345.967 kb on + strand, within MMP_RS01875at 346.016 kb on - strand, within MMP_RS01875at 346.017 kb on + strand, within MMP_RS01875at 346.018 kb on - strand, within MMP_RS01875at 346.019 kb on + strand, within MMP_RS01875at 346.019 kb on + strand, within MMP_RS01875at 346.035 kb on + strand, within MMP_RS01875at 346.067 kb on - strand, within MMP_RS01875at 346.082 kb on - strand, within MMP_RS01875at 346.104 kb on - strand, within MMP_RS01875at 346.167 kb on + strand, within MMP_RS01875at 346.247 kb on - strand, within MMP_RS01875at 346.271 kb on - strand, within MMP_RS01875at 346.272 kb on + strand, within MMP_RS01875at 346.287 kb on - strand, within MMP_RS01875at 346.287 kb on - strand, within MMP_RS01875at 346.288 kb on + strand, within MMP_RS01875at 346.288 kb on + strand, within MMP_RS01875at 346.343 kb on + strand, within MMP_RS01875at 346.350 kb on - strand, within MMP_RS01875at 346.350 kb on - strand, within MMP_RS01875at 346.353 kb on - strandat 346.365 kb on - strandat 346.366 kb on + strandat 346.366 kb on + strandat 346.366 kb on + strandat 346.367 kb on - strandat 346.367 kb on - strandat 346.408 kb on - strandat 346.411 kb on - strandat 346.412 kb on + strandat 346.421 kb on + strandat 346.437 kb on - strandat 346.438 kb on + strandat 346.462 kb on + strandat 346.545 kb on - strand, within MMP_RS01880at 346.645 kb on - strand, within MMP_RS01880at 346.675 kb on + strand, within MMP_RS01880

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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343,992 + MMP_RS01860 0.57 +1.5
344,004 - MMP_RS01860 0.60 +2.5
344,023 - MMP_RS01860 0.66 +0.5
344,096 - MMP_RS01860 0.90 +0.4
344,099 + -0.4
344,103 + +3.9
344,115 + +1.6
344,128 - -1.4
344,182 - +0.6
344,182 - +3.4
344,182 - +0.4
344,183 + +1.3
344,184 - -0.1
344,184 - +0.6
344,185 + +0.5
344,186 - +0.5
344,187 + -0.4
344,187 + -0.9
344,388 + MMP_RS01865 0.28 +0.3
344,790 + -2.2
344,819 + -0.7
344,856 - +4.0
344,858 - +0.0
344,858 - +0.4
344,858 - -0.5
344,858 - -0.1
344,859 + -1.4
344,859 + +3.6
344,860 - -2.1
344,860 - +1.3
344,860 - -0.4
344,860 - -0.3
344,861 + +1.4
344,861 + -0.6
344,873 + -0.4
344,884 - -0.1
344,910 - +0.6
344,913 + +0.6
344,924 + +0.2
345,036 + MMP_RS01870 0.13 +1.2
345,078 + MMP_RS01870 0.19 -1.2
345,139 + MMP_RS01870 0.27 -1.6
345,140 - MMP_RS01870 0.27 +0.0
345,141 + MMP_RS01870 0.27 -0.6
345,289 - MMP_RS01870 0.47 +1.5
345,372 + MMP_RS01870 0.58 +0.8
345,372 + MMP_RS01870 0.58 +0.8
345,485 - MMP_RS01870 0.74 -0.6
345,560 - MMP_RS01870 0.84 -0.0
345,605 + MMP_RS01870 0.90 +0.4
345,614 - -1.2
345,671 - +0.7
345,729 - +3.1
345,735 - -0.7
345,739 - -0.6
345,739 - +0.6
345,740 + -0.1
345,743 - +0.0
345,756 + -0.7
345,757 - -3.2
345,774 - -1.7
345,774 - -0.9
345,774 - +0.6
345,775 + -0.4
345,775 + -0.7
345,783 - -0.9
345,789 + +2.6
345,816 + -3.6
345,826 + -0.4
345,829 - -1.2
345,883 + MMP_RS01875 0.11 -4.3
345,958 - MMP_RS01875 0.23 +0.0
345,958 - MMP_RS01875 0.23 -2.2
345,959 + MMP_RS01875 0.24 -0.5
345,959 + MMP_RS01875 0.24 -1.2
345,959 + MMP_RS01875 0.24 -1.5
345,960 - MMP_RS01875 0.24 -2.3
345,961 + MMP_RS01875 0.24 -2.7
345,962 - MMP_RS01875 0.24 -3.5
345,962 - MMP_RS01875 0.24 +3.2
345,962 - MMP_RS01875 0.24 -3.9
345,963 + MMP_RS01875 0.24 +3.0
345,963 + MMP_RS01875 0.24 -1.4
345,967 + MMP_RS01875 0.25 +1.5
345,967 + MMP_RS01875 0.25 -3.1
346,016 - MMP_RS01875 0.33 -2.2
346,017 + MMP_RS01875 0.33 -1.6
346,018 - MMP_RS01875 0.34 -3.5
346,019 + MMP_RS01875 0.34 -2.4
346,019 + MMP_RS01875 0.34 -3.1
346,035 + MMP_RS01875 0.36 -1.8
346,067 - MMP_RS01875 0.42 -0.7
346,082 - MMP_RS01875 0.44 -3.6
346,104 - MMP_RS01875 0.48 -3.1
346,167 + MMP_RS01875 0.59 -2.6
346,247 - MMP_RS01875 0.72 -0.8
346,271 - MMP_RS01875 0.76 -2.0
346,272 + MMP_RS01875 0.76 -2.3
346,287 - MMP_RS01875 0.79 -2.6
346,287 - MMP_RS01875 0.79 -2.1
346,288 + MMP_RS01875 0.79 -3.8
346,288 + MMP_RS01875 0.79 -2.1
346,343 + MMP_RS01875 0.88 +0.2
346,350 - MMP_RS01875 0.90 -2.5
346,350 - MMP_RS01875 0.90 -2.9
346,353 - -0.7
346,365 - -1.3
346,366 + +0.9
346,366 + -2.6
346,366 + -1.7
346,367 - -1.3
346,367 - -2.4
346,408 - -3.3
346,411 - -1.8
346,412 + -2.3
346,421 + -4.2
346,437 - -3.6
346,438 + -2.8
346,462 + +2.0
346,545 - MMP_RS01880 0.12 +1.5
346,645 - MMP_RS01880 0.21 +3.8
346,675 + MMP_RS01880 0.24 -1.8

Or see this region's nucleotide sequence