Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08935 and MMP_RS01420 are separated by 241 nucleotides MMP_RS01420 and MMP_RS01425 are separated by 229 nucleotides MMP_RS01425 and MMP_RS01430 are separated by 17 nucleotides
MMP_RS08935: MMP_RS08935 - hypothetical protein, at 263,080 to 263,229
_RS08935
MMP_RS01420: MMP_RS01420 - hypothetical protein, at 263,471 to 263,668
_RS01420
MMP_RS01425: MMP_RS01425 - tyrosine--tRNA ligase, at 263,898 to 264,827
_RS01425
MMP_RS01430: MMP_RS01430 - mechanosensitive ion channel family protein, at 264,845 to 265,900
_RS01430
Position (kb) 263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 262.926 kb on - strand at 262.927 kb on + strand at 263.020 kb on - strand at 263.020 kb on - strand at 263.069 kb on - strand at 263.072 kb on - strand at 263.427 kb on + strand at 263.454 kb on - strand at 263.476 kb on + strand at 263.486 kb on - strand at 263.618 kb on - strand, within MMP_RS01420 at 263.621 kb on + strand, within MMP_RS01420 at 263.681 kb on + strand at 263.706 kb on - strand at 263.732 kb on - strand at 263.736 kb on + strand at 263.758 kb on - strand at 263.778 kb on + strand at 263.801 kb on + strand at 263.838 kb on + strand at 263.838 kb on + strand at 263.902 kb on - strand at 263.909 kb on - strand at 264.233 kb on - strand at 264.238 kb on - strand at 264.238 kb on - strand at 264.291 kb on + strand at 264.341 kb on + strand at 264.368 kb on + strand at 264.512 kb on - strand at 264.547 kb on - strand at 264.547 kb on - strand at 264.942 kb on + strand at 265.180 kb on + strand, within MMP_RS01430 at 265.222 kb on - strand, within MMP_RS01430 at 265.495 kb on - strand, within MMP_RS01430 at 265.501 kb on - strand, within MMP_RS01430 at 265.502 kb on + strand, within MMP_RS01430 at 265.534 kb on - strand, within MMP_RS01430 at 265.535 kb on + strand, within MMP_RS01430 at 265.602 kb on - strand, within MMP_RS01430 at 265.603 kb on + strand, within MMP_RS01430 at 265.648 kb on + strand, within MMP_RS01430
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 262,926 - +0.8 262,927 + +2.3 263,020 - -0.4 263,020 - +0.2 263,069 - -1.2 263,072 - +1.2 263,427 + -0.6 263,454 - +2.4 263,476 + +2.4 263,486 - -0.1 263,618 - MMP_RS01420 0.74 +0.8 263,621 + MMP_RS01420 0.76 +2.6 263,681 + +0.5 263,706 - +0.1 263,732 - +0.0 263,736 + -1.3 263,758 - +0.3 263,778 + -1.3 263,801 + +0.6 263,838 + -1.7 263,838 + -0.8 263,902 - -3.6 263,909 - -0.7 264,233 - -1.5 264,238 - -1.2 264,238 - -2.1 264,291 + +3.1 264,341 + -2.1 264,368 + +1.2 264,512 - -2.8 264,547 - -3.0 264,547 - -3.0 264,942 + +0.0 265,180 + MMP_RS01430 0.32 -1.8 265,222 - MMP_RS01430 0.36 +0.4 265,495 - MMP_RS01430 0.62 +0.1 265,501 - MMP_RS01430 0.62 +0.2 265,502 + MMP_RS01430 0.62 -0.1 265,534 - MMP_RS01430 0.65 +0.3 265,535 + MMP_RS01430 0.65 -0.3 265,602 - MMP_RS01430 0.72 +0.8 265,603 + MMP_RS01430 0.72 -1.3 265,648 + MMP_RS01430 0.76 -1.8
Or see this region's nucleotide sequence