Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01405 and MMP_RS01410 are separated by 178 nucleotides MMP_RS01410 and MMP_RS01415 overlap by 4 nucleotides MMP_RS01415 and MMP_RS08935 are separated by 331 nucleotides MMP_RS08935 and MMP_RS01420 are separated by 241 nucleotides
MMP_RS01405: MMP_RS01405 - 50S ribosomal protein L1, at 261,024 to 261,665
_RS01405
MMP_RS01410: MMP_RS01410 - DNA-directed RNA polymerase subunit L, at 261,844 to 262,134
_RS01410
MMP_RS01415: MMP_RS01415 - DUF2067 domain-containing protein, at 262,131 to 262,748
_RS01415
MMP_RS08935: MMP_RS08935 - hypothetical protein, at 263,080 to 263,229
_RS08935
MMP_RS01420: MMP_RS01420 - hypothetical protein, at 263,471 to 263,668
_RS01420
Position (kb) 262
263 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 261.403 kb on + strand at 261.724 kb on - strand at 261.833 kb on - strand at 262.128 kb on + strand at 262.170 kb on - strand at 262.212 kb on - strand, within MMP_RS01415 at 262.333 kb on - strand, within MMP_RS01415 at 262.353 kb on - strand, within MMP_RS01415 at 262.419 kb on + strand, within MMP_RS01415 at 262.625 kb on + strand, within MMP_RS01415 at 262.682 kb on - strand, within MMP_RS01415 at 262.682 kb on - strand, within MMP_RS01415 at 262.682 kb on - strand, within MMP_RS01415 at 262.729 kb on + strand at 262.734 kb on - strand at 262.748 kb on - strand at 262.762 kb on - strand at 262.789 kb on - strand at 262.790 kb on + strand at 262.793 kb on - strand at 262.796 kb on + strand at 262.824 kb on - strand at 262.825 kb on + strand at 262.825 kb on + strand at 262.828 kb on - strand at 262.828 kb on - strand at 262.834 kb on - strand at 262.835 kb on + strand at 262.839 kb on + strand at 262.849 kb on - strand at 262.926 kb on - strand at 262.927 kb on + strand at 263.020 kb on - strand at 263.020 kb on - strand at 263.069 kb on - strand at 263.072 kb on - strand at 263.427 kb on + strand at 263.454 kb on - strand at 263.476 kb on + strand at 263.486 kb on - strand at 263.618 kb on - strand, within MMP_RS01420 at 263.621 kb on + strand, within MMP_RS01420 at 263.681 kb on + strand at 263.706 kb on - strand at 263.732 kb on - strand at 263.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 261,403 + -1.8 261,724 - -1.2 261,833 - +1.0 262,128 + -0.0 262,170 - -0.7 262,212 - MMP_RS01415 0.13 +0.4 262,333 - MMP_RS01415 0.33 +1.6 262,353 - MMP_RS01415 0.36 +0.1 262,419 + MMP_RS01415 0.47 -0.4 262,625 + MMP_RS01415 0.80 +3.4 262,682 - MMP_RS01415 0.89 -0.3 262,682 - MMP_RS01415 0.89 -0.0 262,682 - MMP_RS01415 0.89 +0.5 262,729 + +1.7 262,734 - +2.1 262,748 - +0.9 262,762 - +1.6 262,789 - +2.3 262,790 + +1.6 262,793 - +1.0 262,796 + +3.5 262,824 - -0.3 262,825 + -0.6 262,825 + +4.2 262,828 - -0.3 262,828 - +2.1 262,834 - -2.3 262,835 + -0.4 262,839 + +0.6 262,849 - +0.9 262,926 - +0.8 262,927 + +2.3 263,020 - -0.4 263,020 - +0.2 263,069 - -1.2 263,072 - +1.2 263,427 + -0.6 263,454 - +2.4 263,476 + +2.4 263,486 - -0.1 263,618 - MMP_RS01420 0.74 +0.8 263,621 + MMP_RS01420 0.76 +2.6 263,681 + +0.5 263,706 - +0.1 263,732 - +0.0 263,736 + -1.3
Or see this region's nucleotide sequence