Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01290 and MMP_RS01295 overlap by 23 nucleotides MMP_RS01295 and MMP_RS01300 are separated by 51 nucleotides MMP_RS01300 and MMP_RS01305 are separated by 1 nucleotides MMP_RS01305 and MMP_RS01310 overlap by 20 nucleotides MMP_RS01310 and MMP_RS01315 are separated by 3 nucleotides
MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960
_RS01290
MMP_RS01295: MMP_RS01295 - hypothetical protein, at 243,938 to 244,393
_RS01295
MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930
_RS01300
MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789
_RS01305
MMP_RS01310: MMP_RS01310 - hypothetical protein, at 245,770 to 246,333
_RS01310
MMP_RS01315: MMP_RS01315 - DUF2341 domain-containing protein, at 246,337 to 248,100
_RS01315
Position (kb) 244
245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 243.999 kb on - strand, within MMP_RS01295 at 244.000 kb on + strand, within MMP_RS01295 at 244.131 kb on + strand, within MMP_RS01295 at 244.185 kb on + strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.191 kb on - strand, within MMP_RS01295 at 244.214 kb on + strand, within MMP_RS01295 at 244.229 kb on + strand, within MMP_RS01295 at 244.288 kb on - strand, within MMP_RS01295 at 244.313 kb on + strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.381 kb on - strand at 244.407 kb on + strand at 244.414 kb on + strand at 244.439 kb on - strand at 244.441 kb on - strand at 244.471 kb on - strand at 244.472 kb on + strand at 244.491 kb on - strand at 244.534 kb on + strand, within MMP_RS01300 at 244.588 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.607 kb on + strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.667 kb on - strand, within MMP_RS01300 at 244.733 kb on + strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.742 kb on + strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.799 kb on + strand, within MMP_RS01300 at 244.980 kb on - strand at 245.022 kb on - strand, within MMP_RS01305 at 245.133 kb on - strand, within MMP_RS01305 at 245.151 kb on - strand, within MMP_RS01305 at 245.154 kb on - strand, within MMP_RS01305 at 245.154 kb on - strand, within MMP_RS01305 at 245.154 kb on - strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.203 kb on + strand, within MMP_RS01305 at 245.203 kb on + strand, within MMP_RS01305 at 245.242 kb on - strand, within MMP_RS01305 at 245.248 kb on + strand, within MMP_RS01305 at 245.253 kb on + strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.267 kb on + strand, within MMP_RS01305 at 245.271 kb on - strand, within MMP_RS01305 at 245.274 kb on - strand, within MMP_RS01305 at 245.293 kb on + strand, within MMP_RS01305 at 245.297 kb on - strand, within MMP_RS01305 at 245.298 kb on + strand, within MMP_RS01305 at 245.298 kb on + strand, within MMP_RS01305 at 245.339 kb on - strand, within MMP_RS01305 at 245.435 kb on - strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.509 kb on - strand, within MMP_RS01305 at 245.560 kb on - strand, within MMP_RS01305 at 245.560 kb on - strand, within MMP_RS01305 at 245.561 kb on + strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.622 kb on + strand, within MMP_RS01305 at 245.625 kb on - strand, within MMP_RS01305 at 245.625 kb on - strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.701 kb on - strand, within MMP_RS01305 at 245.706 kb on + strand at 245.706 kb on + strand at 245.710 kb on + strand at 245.720 kb on - strand at 245.754 kb on - strand at 245.754 kb on - strand at 245.761 kb on - strand at 245.822 kb on - strand at 245.822 kb on - strand at 245.823 kb on + strand at 245.861 kb on + strand, within MMP_RS01310 at 245.893 kb on - strand, within MMP_RS01310 at 245.894 kb on + strand, within MMP_RS01310 at 245.894 kb on + strand, within MMP_RS01310 at 245.901 kb on - strand, within MMP_RS01310 at 245.902 kb on + strand, within MMP_RS01310 at 245.902 kb on + strand, within MMP_RS01310 at 245.905 kb on + strand, within MMP_RS01310 at 245.906 kb on - strand, within MMP_RS01310 at 245.907 kb on + strand, within MMP_RS01310 at 245.929 kb on + strand, within MMP_RS01310 at 245.933 kb on - strand, within MMP_RS01310 at 245.934 kb on + strand, within MMP_RS01310 at 245.945 kb on - strand, within MMP_RS01310 at 245.946 kb on + strand, within MMP_RS01310 at 245.971 kb on + strand, within MMP_RS01310 at 245.991 kb on - strand, within MMP_RS01310 at 245.998 kb on + strand, within MMP_RS01310 at 246.052 kb on + strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.056 kb on + strand, within MMP_RS01310 at 246.060 kb on + strand, within MMP_RS01310 at 246.124 kb on + strand, within MMP_RS01310 at 246.136 kb on + strand, within MMP_RS01310 at 246.157 kb on - strand, within MMP_RS01310 at 246.233 kb on + strand, within MMP_RS01310 at 246.281 kb on + strand at 246.300 kb on - strand at 246.314 kb on - strand at 246.314 kb on - strand at 246.359 kb on - strand at 246.403 kb on + strand at 246.403 kb on + strand at 246.403 kb on + strand at 246.410 kb on - strand at 246.411 kb on + strand at 246.416 kb on - strand at 246.517 kb on + strand, within MMP_RS01315 at 246.520 kb on + strand, within MMP_RS01315 at 246.527 kb on - strand, within MMP_RS01315 at 246.566 kb on + strand, within MMP_RS01315 at 246.604 kb on - strand, within MMP_RS01315 at 246.643 kb on + strand, within MMP_RS01315 at 246.644 kb on - strand, within MMP_RS01315 at 246.702 kb on - strand, within MMP_RS01315 at 246.703 kb on + strand, within MMP_RS01315 at 246.720 kb on - strand, within MMP_RS01315 at 246.720 kb on - strand, within MMP_RS01315 at 246.736 kb on - strand, within MMP_RS01315 at 246.743 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.752 kb on + strand, within MMP_RS01315 at 246.752 kb on + strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.772 kb on - strand, within MMP_RS01315 at 246.772 kb on - strand, within MMP_RS01315
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 243,999 - MMP_RS01295 0.13 -1.5 244,000 + MMP_RS01295 0.14 -1.0 244,131 + MMP_RS01295 0.42 -2.0 244,185 + MMP_RS01295 0.54 -1.0 244,189 - MMP_RS01295 0.55 -1.6 244,189 - MMP_RS01295 0.55 -0.9 244,190 + MMP_RS01295 0.55 -1.0 244,190 + MMP_RS01295 0.55 -2.6 244,190 + MMP_RS01295 0.55 -0.6 244,191 - MMP_RS01295 0.55 -1.5 244,214 + MMP_RS01295 0.61 -1.9 244,229 + MMP_RS01295 0.64 -1.4 244,288 - MMP_RS01295 0.77 -2.8 244,313 + MMP_RS01295 0.82 -1.0 244,336 - MMP_RS01295 0.87 -2.4 244,336 - MMP_RS01295 0.87 -0.5 244,336 - MMP_RS01295 0.87 -2.1 244,336 - MMP_RS01295 0.87 -1.0 244,336 - MMP_RS01295 0.87 -1.1 244,337 + MMP_RS01295 0.88 -1.6 244,337 + MMP_RS01295 0.88 -1.6 244,381 - -0.9 244,407 + -0.8 244,414 + +1.0 244,439 - +1.7 244,441 - +1.9 244,471 - -0.5 244,472 + +2.0 244,491 - -0.0 244,534 + MMP_RS01300 0.18 +1.8 244,588 - MMP_RS01300 0.29 +1.0 244,606 - MMP_RS01300 0.33 -0.6 244,606 - MMP_RS01300 0.33 +1.1 244,606 - MMP_RS01300 0.33 -0.2 244,606 - MMP_RS01300 0.33 -0.9 244,606 - MMP_RS01300 0.33 +0.0 244,606 - MMP_RS01300 0.33 +0.3 244,607 + MMP_RS01300 0.33 +0.1 244,610 - MMP_RS01300 0.34 +0.4 244,610 - MMP_RS01300 0.34 +0.5 244,610 - MMP_RS01300 0.34 -1.3 244,610 - MMP_RS01300 0.34 +0.3 244,610 - MMP_RS01300 0.34 -1.8 244,610 - MMP_RS01300 0.34 -0.4 244,610 - MMP_RS01300 0.34 -0.6 244,610 - MMP_RS01300 0.34 +0.4 244,611 + MMP_RS01300 0.34 -0.1 244,611 + MMP_RS01300 0.34 -0.1 244,611 + MMP_RS01300 0.34 -0.8 244,612 - MMP_RS01300 0.34 -1.3 244,612 - MMP_RS01300 0.34 -0.9 244,612 - MMP_RS01300 0.34 -0.9 244,612 - MMP_RS01300 0.34 -2.6 244,612 - MMP_RS01300 0.34 +0.2 244,613 + MMP_RS01300 0.35 -0.1 244,613 + MMP_RS01300 0.35 -1.2 244,613 + MMP_RS01300 0.35 +0.8 244,614 - MMP_RS01300 0.35 -1.4 244,614 - MMP_RS01300 0.35 -0.7 244,615 + MMP_RS01300 0.35 -1.1 244,615 + MMP_RS01300 0.35 -0.1 244,623 + MMP_RS01300 0.37 -0.1 244,623 + MMP_RS01300 0.37 -0.0 244,653 - MMP_RS01300 0.43 -0.1 244,653 - MMP_RS01300 0.43 +0.2 244,664 + MMP_RS01300 0.45 +1.4 244,664 + MMP_RS01300 0.45 -0.4 244,667 - MMP_RS01300 0.46 -1.0 244,733 + MMP_RS01300 0.59 +1.7 244,735 - MMP_RS01300 0.60 -1.3 244,735 - MMP_RS01300 0.60 +0.8 244,742 + MMP_RS01300 0.61 -0.5 244,798 - MMP_RS01300 0.73 -0.5 244,798 - MMP_RS01300 0.73 -0.8 244,799 + MMP_RS01300 0.73 +0.3 244,980 - -2.0 245,022 - MMP_RS01305 0.10 -1.8 245,133 - MMP_RS01305 0.23 -1.5 245,151 - MMP_RS01305 0.26 -1.5 245,154 - MMP_RS01305 0.26 -1.3 245,154 - MMP_RS01305 0.26 -1.4 245,154 - MMP_RS01305 0.26 -1.3 245,155 + MMP_RS01305 0.26 -1.6 245,155 + MMP_RS01305 0.26 -0.5 245,155 + MMP_RS01305 0.26 -1.7 245,155 + MMP_RS01305 0.26 -0.3 245,203 + MMP_RS01305 0.32 -0.0 245,203 + MMP_RS01305 0.32 -0.8 245,242 - MMP_RS01305 0.36 -1.6 245,248 + MMP_RS01305 0.37 -0.3 245,253 + MMP_RS01305 0.37 -0.8 245,266 - MMP_RS01305 0.39 -0.9 245,266 - MMP_RS01305 0.39 +0.4 245,266 - MMP_RS01305 0.39 -3.0 245,266 - MMP_RS01305 0.39 -2.0 245,267 + MMP_RS01305 0.39 -1.1 245,271 - MMP_RS01305 0.40 -1.2 245,274 - MMP_RS01305 0.40 -1.5 245,293 + MMP_RS01305 0.42 -0.9 245,297 - MMP_RS01305 0.43 -1.4 245,298 + MMP_RS01305 0.43 -0.7 245,298 + MMP_RS01305 0.43 -0.8 245,339 - MMP_RS01305 0.47 -1.5 245,435 - MMP_RS01305 0.59 -1.9 245,436 + MMP_RS01305 0.59 -1.9 245,436 + MMP_RS01305 0.59 -2.9 245,436 + MMP_RS01305 0.59 -1.2 245,436 + MMP_RS01305 0.59 -0.9 245,509 - MMP_RS01305 0.67 -1.4 245,560 - MMP_RS01305 0.73 -1.0 245,560 - MMP_RS01305 0.73 -1.6 245,561 + MMP_RS01305 0.73 -1.9 245,621 - MMP_RS01305 0.80 -3.8 245,621 - MMP_RS01305 0.80 -1.0 245,621 - MMP_RS01305 0.80 -1.8 245,621 - MMP_RS01305 0.80 -1.0 245,622 + MMP_RS01305 0.80 -1.2 245,625 - MMP_RS01305 0.81 -1.0 245,625 - MMP_RS01305 0.81 -1.2 245,626 + MMP_RS01305 0.81 -1.8 245,626 + MMP_RS01305 0.81 -1.2 245,626 + MMP_RS01305 0.81 -1.2 245,626 + MMP_RS01305 0.81 -0.6 245,701 - MMP_RS01305 0.90 -2.2 245,706 + -1.3 245,706 + -0.2 245,710 + -1.0 245,720 - -1.7 245,754 - -1.0 245,754 - -0.2 245,761 - -1.2 245,822 - -2.0 245,822 - -1.2 245,823 + -1.9 245,861 + MMP_RS01310 0.16 -1.0 245,893 - MMP_RS01310 0.22 -0.2 245,894 + MMP_RS01310 0.22 -0.7 245,894 + MMP_RS01310 0.22 -1.2 245,901 - MMP_RS01310 0.23 -1.5 245,902 + MMP_RS01310 0.23 -0.8 245,902 + MMP_RS01310 0.23 -1.3 245,905 + MMP_RS01310 0.24 -1.4 245,906 - MMP_RS01310 0.24 -3.7 245,907 + MMP_RS01310 0.24 -1.6 245,929 + MMP_RS01310 0.28 -0.7 245,933 - MMP_RS01310 0.29 -1.3 245,934 + MMP_RS01310 0.29 -1.4 245,945 - MMP_RS01310 0.31 -0.9 245,946 + MMP_RS01310 0.31 -1.5 245,971 + MMP_RS01310 0.36 -0.2 245,991 - MMP_RS01310 0.39 -1.7 245,998 + MMP_RS01310 0.40 -1.4 246,052 + MMP_RS01310 0.50 -1.5 246,055 - MMP_RS01310 0.51 -1.5 246,055 - MMP_RS01310 0.51 -0.6 246,055 - MMP_RS01310 0.51 -1.6 246,056 + MMP_RS01310 0.51 -2.1 246,060 + MMP_RS01310 0.51 -1.8 246,124 + MMP_RS01310 0.63 -2.5 246,136 + MMP_RS01310 0.65 +0.0 246,157 - MMP_RS01310 0.69 -1.7 246,233 + MMP_RS01310 0.82 -0.9 246,281 + -1.5 246,300 - -1.4 246,314 - -0.6 246,314 - +0.2 246,359 - -1.2 246,403 + -1.7 246,403 + -2.1 246,403 + -2.3 246,410 - -1.2 246,411 + -1.0 246,416 - -1.8 246,517 + MMP_RS01315 0.10 -1.7 246,520 + MMP_RS01315 0.10 -1.2 246,527 - MMP_RS01315 0.11 -2.0 246,566 + MMP_RS01315 0.13 -1.2 246,604 - MMP_RS01315 0.15 -1.7 246,643 + MMP_RS01315 0.17 -1.2 246,644 - MMP_RS01315 0.17 -1.3 246,702 - MMP_RS01315 0.21 -1.3 246,703 + MMP_RS01315 0.21 -1.1 246,720 - MMP_RS01315 0.22 -1.4 246,720 - MMP_RS01315 0.22 -1.2 246,736 - MMP_RS01315 0.23 -1.5 246,743 - MMP_RS01315 0.23 -1.4 246,751 - MMP_RS01315 0.23 -2.0 246,751 - MMP_RS01315 0.23 -3.0 246,751 - MMP_RS01315 0.23 -1.2 246,752 + MMP_RS01315 0.24 -1.3 246,752 + MMP_RS01315 0.24 -1.0 246,770 - MMP_RS01315 0.25 -0.7 246,770 - MMP_RS01315 0.25 -1.2 246,770 - MMP_RS01315 0.25 -1.9 246,771 + MMP_RS01315 0.25 -1.7 246,771 + MMP_RS01315 0.25 -0.8 246,771 + MMP_RS01315 0.25 -0.5 246,772 - MMP_RS01315 0.25 -1.9 246,772 - MMP_RS01315 0.25 -1.0
Or see this region's nucleotide sequence