Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01145 and MMP_RS01150 are separated by 155 nucleotides MMP_RS01150 and MMP_RS01155 are separated by 15 nucleotides MMP_RS01155 and MMP_RS01160 are separated by 137 nucleotides
MMP_RS01145: MMP_RS01145 - ABC transporter ATP-binding protein, at 214,016 to 215,158
_RS01145
MMP_RS01150: MMP_RS01150 - aldo/keto reductase, at 215,314 to 216,543
_RS01150
MMP_RS01155: MMP_RS01155 - XRE family transcriptional regulator, at 216,559 to 217,113
_RS01155
MMP_RS01160: MMP_RS01160 - DMT family transporter, at 217,251 to 218,150
_RS01160
Position (kb) 215
216
217 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 214.408 kb on + strand, within MMP_RS01145 at 214.474 kb on + strand, within MMP_RS01145 at 214.782 kb on - strand, within MMP_RS01145 at 214.782 kb on - strand, within MMP_RS01145 at 214.903 kb on + strand, within MMP_RS01145 at 214.911 kb on - strand, within MMP_RS01145 at 214.911 kb on - strand, within MMP_RS01145 at 214.916 kb on + strand, within MMP_RS01145 at 214.917 kb on - strand, within MMP_RS01145 at 214.965 kb on - strand, within MMP_RS01145 at 214.965 kb on - strand, within MMP_RS01145 at 214.966 kb on + strand, within MMP_RS01145 at 215.062 kb on + strand at 215.217 kb on - strand at 215.218 kb on + strand at 215.218 kb on + strand at 215.218 kb on + strand at 215.219 kb on - strand at 215.219 kb on - strand at 215.219 kb on - strand at 215.219 kb on - strand at 215.219 kb on - strand at 215.219 kb on - strand at 215.219 kb on - strand at 215.220 kb on + strand at 215.220 kb on + strand at 215.220 kb on + strand at 215.222 kb on + strand at 215.237 kb on - strand at 215.309 kb on - strand at 215.313 kb on - strand at 215.313 kb on - strand at 215.314 kb on + strand at 215.467 kb on + strand, within MMP_RS01150 at 215.603 kb on + strand, within MMP_RS01150 at 215.650 kb on - strand, within MMP_RS01150 at 215.835 kb on - strand, within MMP_RS01150 at 216.216 kb on - strand, within MMP_RS01150 at 216.331 kb on + strand, within MMP_RS01150 at 216.486 kb on + strand at 216.510 kb on - strand at 216.572 kb on - strand at 216.572 kb on - strand at 216.572 kb on - strand at 216.575 kb on + strand at 216.640 kb on + strand, within MMP_RS01155 at 216.739 kb on + strand, within MMP_RS01155 at 216.790 kb on - strand, within MMP_RS01155 at 216.824 kb on + strand, within MMP_RS01155 at 216.857 kb on - strand, within MMP_RS01155 at 216.924 kb on - strand, within MMP_RS01155 at 216.955 kb on - strand, within MMP_RS01155 at 217.120 kb on - strand at 217.136 kb on - strand at 217.140 kb on + strand at 217.163 kb on + strand at 217.171 kb on - strand at 217.180 kb on - strand at 217.180 kb on - strand at 217.181 kb on + strand at 217.230 kb on + strand at 217.232 kb on - strand at 217.233 kb on + strand at 217.238 kb on + strand at 217.379 kb on + strand, within MMP_RS01160 at 217.391 kb on + strand, within MMP_RS01160 at 217.408 kb on - strand, within MMP_RS01160 at 217.464 kb on - strand, within MMP_RS01160 at 217.464 kb on - strand, within MMP_RS01160 at 217.504 kb on + strand, within MMP_RS01160
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 214,408 + MMP_RS01145 0.34 +1.5 214,474 + MMP_RS01145 0.40 +1.8 214,782 - MMP_RS01145 0.67 +0.7 214,782 - MMP_RS01145 0.67 +0.4 214,903 + MMP_RS01145 0.78 +2.2 214,911 - MMP_RS01145 0.78 -0.4 214,911 - MMP_RS01145 0.78 -0.9 214,916 + MMP_RS01145 0.79 -0.4 214,917 - MMP_RS01145 0.79 +1.6 214,965 - MMP_RS01145 0.83 +0.7 214,965 - MMP_RS01145 0.83 +0.4 214,966 + MMP_RS01145 0.83 +0.4 215,062 + +1.4 215,217 - +1.9 215,218 + +1.4 215,218 + +1.0 215,218 + +0.2 215,219 - -0.6 215,219 - +1.3 215,219 - -0.2 215,219 - +4.3 215,219 - -0.0 215,219 - +1.4 215,219 - +0.5 215,220 + +0.8 215,220 + +0.5 215,220 + +0.4 215,222 + +0.1 215,237 - +0.1 215,309 - +0.1 215,313 - -0.3 215,313 - +0.5 215,314 + +1.8 215,467 + MMP_RS01150 0.12 -0.2 215,603 + MMP_RS01150 0.23 -0.1 215,650 - MMP_RS01150 0.27 +1.4 215,835 - MMP_RS01150 0.42 +3.6 216,216 - MMP_RS01150 0.73 +1.8 216,331 + MMP_RS01150 0.83 +0.5 216,486 + +0.1 216,510 - +0.6 216,572 - +0.6 216,572 - +1.0 216,572 - +1.2 216,575 + +1.4 216,640 + MMP_RS01155 0.15 +0.3 216,739 + MMP_RS01155 0.32 -1.3 216,790 - MMP_RS01155 0.42 +2.2 216,824 + MMP_RS01155 0.48 +0.6 216,857 - MMP_RS01155 0.54 +1.3 216,924 - MMP_RS01155 0.66 +1.7 216,955 - MMP_RS01155 0.71 +0.5 217,120 - +2.4 217,136 - +1.2 217,140 + +0.1 217,163 + -0.0 217,171 - +0.8 217,180 - +1.7 217,180 - +1.4 217,181 + +1.9 217,230 + +1.4 217,232 - +1.0 217,233 + -0.4 217,238 + +0.6 217,379 + MMP_RS01160 0.14 +3.1 217,391 + MMP_RS01160 0.16 -0.2 217,408 - MMP_RS01160 0.17 -0.5 217,464 - MMP_RS01160 0.24 +2.1 217,464 - MMP_RS01160 0.24 +2.3 217,504 + MMP_RS01160 0.28 -0.8
Or see this region's nucleotide sequence