Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01070 and MMP_RS01075 are separated by 84 nucleotides MMP_RS01075 and MMP_RS01080 are separated by 281 nucleotides
MMP_RS01070: MMP_RS01070 - hypothetical protein, at 200,856 to 201,914
_RS01070
MMP_RS01075: MMP_RS01075 - hypothetical protein, at 201,999 to 202,223
_RS01075
MMP_RS01080: MMP_RS01080 - DUF2202 domain-containing protein, at 202,505 to 203,332
_RS01080
Position (kb) 201
202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 201.098 kb on - strand, within MMP_RS01070 at 201.159 kb on - strand, within MMP_RS01070 at 201.237 kb on - strand, within MMP_RS01070 at 201.282 kb on + strand, within MMP_RS01070 at 201.334 kb on + strand, within MMP_RS01070 at 201.336 kb on + strand, within MMP_RS01070 at 201.342 kb on - strand, within MMP_RS01070 at 201.379 kb on + strand, within MMP_RS01070 at 201.380 kb on - strand, within MMP_RS01070 at 201.391 kb on - strand, within MMP_RS01070 at 201.392 kb on + strand, within MMP_RS01070 at 201.437 kb on - strand, within MMP_RS01070 at 201.443 kb on - strand, within MMP_RS01070 at 201.461 kb on - strand, within MMP_RS01070 at 201.466 kb on - strand, within MMP_RS01070 at 201.504 kb on + strand, within MMP_RS01070 at 201.559 kb on + strand, within MMP_RS01070 at 201.583 kb on - strand, within MMP_RS01070 at 201.583 kb on - strand, within MMP_RS01070 at 201.583 kb on - strand, within MMP_RS01070 at 201.588 kb on - strand, within MMP_RS01070 at 201.589 kb on + strand, within MMP_RS01070 at 201.601 kb on + strand, within MMP_RS01070 at 201.620 kb on - strand, within MMP_RS01070 at 201.656 kb on - strand, within MMP_RS01070 at 201.657 kb on + strand, within MMP_RS01070 at 201.658 kb on - strand, within MMP_RS01070 at 201.659 kb on + strand, within MMP_RS01070 at 201.659 kb on + strand, within MMP_RS01070 at 201.659 kb on + strand, within MMP_RS01070 at 201.665 kb on + strand, within MMP_RS01070 at 201.795 kb on - strand, within MMP_RS01070 at 201.888 kb on - strand at 201.889 kb on + strand at 201.894 kb on + strand at 201.895 kb on - strand at 201.933 kb on - strand at 201.938 kb on + strand at 202.195 kb on - strand, within MMP_RS01075 at 202.200 kb on + strand, within MMP_RS01075 at 202.204 kb on - strand at 202.384 kb on + strand at 202.394 kb on - strand at 202.428 kb on - strand at 202.428 kb on - strand at 202.464 kb on - strand at 202.465 kb on + strand at 202.466 kb on - strand at 202.466 kb on - strand at 202.466 kb on - strand at 202.467 kb on + strand at 202.488 kb on + strand at 202.488 kb on + strand at 202.491 kb on + strand at 202.494 kb on - strand at 202.495 kb on + strand at 202.554 kb on - strand at 202.760 kb on - strand, within MMP_RS01080 at 202.771 kb on + strand, within MMP_RS01080 at 202.771 kb on + strand, within MMP_RS01080 at 202.800 kb on - strand, within MMP_RS01080 at 202.814 kb on + strand, within MMP_RS01080 at 202.846 kb on + strand, within MMP_RS01080 at 202.852 kb on + strand, within MMP_RS01080 at 203.169 kb on + strand, within MMP_RS01080
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 201,098 - MMP_RS01070 0.23 -2.9 201,159 - MMP_RS01070 0.29 +1.5 201,237 - MMP_RS01070 0.36 +1.3 201,282 + MMP_RS01070 0.40 +0.5 201,334 + MMP_RS01070 0.45 -0.6 201,336 + MMP_RS01070 0.45 +2.3 201,342 - MMP_RS01070 0.46 +0.7 201,379 + MMP_RS01070 0.49 +1.2 201,380 - MMP_RS01070 0.49 +0.2 201,391 - MMP_RS01070 0.51 -0.9 201,392 + MMP_RS01070 0.51 -0.8 201,437 - MMP_RS01070 0.55 -1.4 201,443 - MMP_RS01070 0.55 +2.5 201,461 - MMP_RS01070 0.57 -0.2 201,466 - MMP_RS01070 0.58 +1.1 201,504 + MMP_RS01070 0.61 +2.1 201,559 + MMP_RS01070 0.66 +1.7 201,583 - MMP_RS01070 0.69 +3.2 201,583 - MMP_RS01070 0.69 +3.6 201,583 - MMP_RS01070 0.69 +1.1 201,588 - MMP_RS01070 0.69 +0.2 201,589 + MMP_RS01070 0.69 -0.4 201,601 + MMP_RS01070 0.70 +2.1 201,620 - MMP_RS01070 0.72 -0.1 201,656 - MMP_RS01070 0.76 +1.2 201,657 + MMP_RS01070 0.76 +0.0 201,658 - MMP_RS01070 0.76 -0.1 201,659 + MMP_RS01070 0.76 +1.8 201,659 + MMP_RS01070 0.76 +0.8 201,659 + MMP_RS01070 0.76 +0.1 201,665 + MMP_RS01070 0.76 -1.4 201,795 - MMP_RS01070 0.89 +0.7 201,888 - -0.7 201,889 + +2.5 201,894 + -0.1 201,895 - +0.8 201,933 - +0.7 201,938 + +0.1 202,195 - MMP_RS01075 0.87 -0.4 202,200 + MMP_RS01075 0.89 +5.1 202,204 - -0.1 202,384 + +0.0 202,394 - -2.0 202,428 - +1.3 202,428 - +1.3 202,464 - +1.5 202,465 + +1.8 202,466 - +0.4 202,466 - +0.3 202,466 - -0.4 202,467 + +2.0 202,488 + +1.0 202,488 + +1.5 202,491 + +2.7 202,494 - +1.5 202,495 + +0.1 202,554 - +0.5 202,760 - MMP_RS01080 0.31 +1.5 202,771 + MMP_RS01080 0.32 -1.8 202,771 + MMP_RS01080 0.32 +0.4 202,800 - MMP_RS01080 0.36 +0.3 202,814 + MMP_RS01080 0.37 +1.1 202,846 + MMP_RS01080 0.41 -0.5 202,852 + MMP_RS01080 0.42 -2.1 203,169 + MMP_RS01080 0.80 -0.5
Or see this region's nucleotide sequence