Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01060 and MMP_RS01065 are separated by 199 nucleotides MMP_RS01065 and MMP_RS01070 are separated by 343 nucleotides
MMP_RS01060: MMP_RS01060 - calcium/sodium antiporter, at 198,646 to 199,608
_RS01060
MMP_RS01065: MMP_RS01065 - alpha/beta hydrolase, at 199,808 to 200,512
_RS01065
MMP_RS01070: MMP_RS01070 - hypothetical protein, at 200,856 to 201,914
_RS01070
Position (kb) 199
200
201 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 198.820 kb on + strand, within MMP_RS01060 at 198.820 kb on + strand, within MMP_RS01060 at 198.903 kb on - strand, within MMP_RS01060 at 198.914 kb on + strand, within MMP_RS01060 at 198.930 kb on - strand, within MMP_RS01060 at 198.930 kb on - strand, within MMP_RS01060 at 198.930 kb on - strand, within MMP_RS01060 at 198.931 kb on + strand, within MMP_RS01060 at 198.959 kb on + strand, within MMP_RS01060 at 199.182 kb on - strand, within MMP_RS01060 at 199.182 kb on - strand, within MMP_RS01060 at 199.184 kb on - strand, within MMP_RS01060 at 199.184 kb on - strand, within MMP_RS01060 at 199.185 kb on + strand, within MMP_RS01060 at 199.186 kb on - strand, within MMP_RS01060 at 199.189 kb on - strand, within MMP_RS01060 at 199.197 kb on - strand, within MMP_RS01060 at 199.216 kb on - strand, within MMP_RS01060 at 199.283 kb on - strand, within MMP_RS01060 at 199.318 kb on + strand, within MMP_RS01060 at 199.345 kb on + strand, within MMP_RS01060 at 199.345 kb on + strand, within MMP_RS01060 at 199.540 kb on + strand at 199.564 kb on - strand at 199.586 kb on - strand at 199.586 kb on - strand at 199.586 kb on - strand at 199.587 kb on + strand at 199.587 kb on + strand at 199.608 kb on - strand at 199.608 kb on - strand at 199.655 kb on - strand at 199.656 kb on + strand at 199.661 kb on - strand at 199.662 kb on + strand at 199.663 kb on - strand at 199.664 kb on + strand at 199.670 kb on - strand at 199.694 kb on - strand at 199.708 kb on - strand at 199.708 kb on - strand at 199.708 kb on - strand at 199.721 kb on + strand at 199.721 kb on + strand at 199.782 kb on + strand at 199.848 kb on + strand at 199.862 kb on + strand at 199.869 kb on - strand at 199.938 kb on - strand, within MMP_RS01065 at 199.946 kb on - strand, within MMP_RS01065 at 199.946 kb on - strand, within MMP_RS01065 at 199.972 kb on - strand, within MMP_RS01065 at 199.972 kb on - strand, within MMP_RS01065 at 199.972 kb on - strand, within MMP_RS01065 at 199.973 kb on + strand, within MMP_RS01065 at 199.997 kb on + strand, within MMP_RS01065 at 200.037 kb on + strand, within MMP_RS01065 at 200.037 kb on + strand, within MMP_RS01065 at 200.037 kb on + strand, within MMP_RS01065 at 200.060 kb on - strand, within MMP_RS01065 at 200.093 kb on - strand, within MMP_RS01065 at 200.094 kb on + strand, within MMP_RS01065 at 200.156 kb on - strand, within MMP_RS01065 at 200.189 kb on - strand, within MMP_RS01065 at 200.189 kb on - strand, within MMP_RS01065 at 200.197 kb on - strand, within MMP_RS01065 at 200.202 kb on - strand, within MMP_RS01065 at 200.212 kb on - strand, within MMP_RS01065 at 200.256 kb on - strand, within MMP_RS01065 at 200.257 kb on + strand, within MMP_RS01065 at 200.283 kb on + strand, within MMP_RS01065 at 200.549 kb on - strand at 200.630 kb on + strand at 200.643 kb on + strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.650 kb on - strand at 200.941 kb on - strand at 200.942 kb on + strand at 200.980 kb on - strand, within MMP_RS01070 at 200.980 kb on - strand, within MMP_RS01070 at 200.980 kb on - strand, within MMP_RS01070 at 200.986 kb on - strand, within MMP_RS01070 at 200.998 kb on - strand, within MMP_RS01070 at 201.098 kb on - strand, within MMP_RS01070 at 201.159 kb on - strand, within MMP_RS01070 at 201.237 kb on - strand, within MMP_RS01070 at 201.282 kb on + strand, within MMP_RS01070 at 201.334 kb on + strand, within MMP_RS01070 at 201.336 kb on + strand, within MMP_RS01070 at 201.342 kb on - strand, within MMP_RS01070 at 201.379 kb on + strand, within MMP_RS01070 at 201.380 kb on - strand, within MMP_RS01070 at 201.391 kb on - strand, within MMP_RS01070 at 201.392 kb on + strand, within MMP_RS01070 at 201.437 kb on - strand, within MMP_RS01070 at 201.443 kb on - strand, within MMP_RS01070 at 201.461 kb on - strand, within MMP_RS01070 at 201.466 kb on - strand, within MMP_RS01070 at 201.504 kb on + strand, within MMP_RS01070
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 198,820 + MMP_RS01060 0.18 -1.3 198,820 + MMP_RS01060 0.18 -0.5 198,903 - MMP_RS01060 0.27 +1.9 198,914 + MMP_RS01060 0.28 +0.2 198,930 - MMP_RS01060 0.29 +0.7 198,930 - MMP_RS01060 0.29 -0.7 198,930 - MMP_RS01060 0.29 +1.0 198,931 + MMP_RS01060 0.30 -3.9 198,959 + MMP_RS01060 0.33 +0.3 199,182 - MMP_RS01060 0.56 +0.1 199,182 - MMP_RS01060 0.56 -0.4 199,184 - MMP_RS01060 0.56 +0.4 199,184 - MMP_RS01060 0.56 +0.5 199,185 + MMP_RS01060 0.56 +0.4 199,186 - MMP_RS01060 0.56 +0.4 199,189 - MMP_RS01060 0.56 +1.8 199,197 - MMP_RS01060 0.57 -0.2 199,216 - MMP_RS01060 0.59 +0.8 199,283 - MMP_RS01060 0.66 -2.3 199,318 + MMP_RS01060 0.70 +0.3 199,345 + MMP_RS01060 0.73 +0.1 199,345 + MMP_RS01060 0.73 +2.8 199,540 + +0.4 199,564 - -0.7 199,586 - +2.2 199,586 - -2.8 199,586 - +0.6 199,587 + +1.2 199,587 + +0.7 199,608 - -0.5 199,608 - +1.1 199,655 - +1.1 199,656 + -0.7 199,661 - +5.6 199,662 + -0.4 199,663 - -1.7 199,664 + -0.2 199,670 - -1.1 199,694 - -0.1 199,708 - +1.8 199,708 - +0.4 199,708 - +0.7 199,721 + +1.7 199,721 + +0.8 199,782 + +0.3 199,848 + +1.2 199,862 + -0.3 199,869 - -1.5 199,938 - MMP_RS01065 0.18 +1.9 199,946 - MMP_RS01065 0.20 +0.1 199,946 - MMP_RS01065 0.20 +0.1 199,972 - MMP_RS01065 0.23 +0.6 199,972 - MMP_RS01065 0.23 +2.3 199,972 - MMP_RS01065 0.23 +0.2 199,973 + MMP_RS01065 0.23 +0.3 199,997 + MMP_RS01065 0.27 -0.6 200,037 + MMP_RS01065 0.32 +1.7 200,037 + MMP_RS01065 0.32 +0.6 200,037 + MMP_RS01065 0.32 -0.0 200,060 - MMP_RS01065 0.36 +0.1 200,093 - MMP_RS01065 0.40 -1.0 200,094 + MMP_RS01065 0.41 +1.3 200,156 - MMP_RS01065 0.49 +1.5 200,189 - MMP_RS01065 0.54 +0.7 200,189 - MMP_RS01065 0.54 +2.4 200,197 - MMP_RS01065 0.55 +0.5 200,202 - MMP_RS01065 0.56 +0.3 200,212 - MMP_RS01065 0.57 +0.7 200,256 - MMP_RS01065 0.64 +3.2 200,257 + MMP_RS01065 0.64 +0.9 200,283 + MMP_RS01065 0.67 +1.0 200,549 - -1.4 200,630 + -2.4 200,643 + -0.9 200,644 - -0.4 200,644 - -1.3 200,644 - +0.0 200,644 - +1.9 200,650 - -0.6 200,941 - +0.5 200,942 + +1.0 200,980 - MMP_RS01070 0.12 -1.2 200,980 - MMP_RS01070 0.12 +1.6 200,980 - MMP_RS01070 0.12 +1.6 200,986 - MMP_RS01070 0.12 +1.0 200,998 - MMP_RS01070 0.13 +0.3 201,098 - MMP_RS01070 0.23 -2.9 201,159 - MMP_RS01070 0.29 +1.5 201,237 - MMP_RS01070 0.36 +1.3 201,282 + MMP_RS01070 0.40 +0.5 201,334 + MMP_RS01070 0.45 -0.6 201,336 + MMP_RS01070 0.45 +2.3 201,342 - MMP_RS01070 0.46 +0.7 201,379 + MMP_RS01070 0.49 +1.2 201,380 - MMP_RS01070 0.49 +0.2 201,391 - MMP_RS01070 0.51 -0.9 201,392 + MMP_RS01070 0.51 -0.8 201,437 - MMP_RS01070 0.55 -1.4 201,443 - MMP_RS01070 0.55 +2.5 201,461 - MMP_RS01070 0.57 -0.2 201,466 - MMP_RS01070 0.58 +1.1 201,504 + MMP_RS01070 0.61 +2.1
Or see this region's nucleotide sequence