Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00645

Experiment: McCas_H2_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00640 and MMP_RS00645 are separated by 32 nucleotidesMMP_RS00645 and MMP_RS00650 overlap by 10 nucleotidesMMP_RS00650 and MMP_RS00655 are separated by 3 nucleotides MMP_RS00640: MMP_RS00640 - ABC transporter substrate-binding protein, at 116,352 to 117,383 _RS00640 MMP_RS00645: MMP_RS00645 - iron ABC transporter permease, at 117,416 to 119,032 _RS00645 MMP_RS00650: MMP_RS00650 - ABC transporter ATP-binding protein, at 119,023 to 119,991 _RS00650 MMP_RS00655: MMP_RS00655 - hypothetical protein, at 119,995 to 120,534 _RS00655 Position (kb) 117 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 116.435 kb on - strandat 116.671 kb on + strand, within MMP_RS00640at 116.761 kb on - strand, within MMP_RS00640at 116.821 kb on - strand, within MMP_RS00640at 116.835 kb on - strand, within MMP_RS00640at 116.849 kb on + strand, within MMP_RS00640at 116.883 kb on - strand, within MMP_RS00640at 116.883 kb on - strand, within MMP_RS00640at 116.889 kb on + strand, within MMP_RS00640at 116.893 kb on - strand, within MMP_RS00640at 116.894 kb on + strand, within MMP_RS00640at 116.894 kb on + strand, within MMP_RS00640at 117.032 kb on + strand, within MMP_RS00640at 117.323 kb on - strandat 117.353 kb on - strandat 117.353 kb on - strandat 117.375 kb on + strandat 117.394 kb on - strandat 117.767 kb on - strand, within MMP_RS00645at 117.832 kb on + strand, within MMP_RS00645at 117.832 kb on + strand, within MMP_RS00645at 117.833 kb on - strand, within MMP_RS00645at 118.261 kb on - strand, within MMP_RS00645at 118.261 kb on - strand, within MMP_RS00645at 118.262 kb on + strand, within MMP_RS00645at 118.442 kb on + strand, within MMP_RS00645at 118.442 kb on + strand, within MMP_RS00645at 118.496 kb on - strand, within MMP_RS00645at 118.499 kb on + strand, within MMP_RS00645at 118.500 kb on - strand, within MMP_RS00645at 118.501 kb on + strand, within MMP_RS00645at 118.503 kb on - strand, within MMP_RS00645at 118.504 kb on + strand, within MMP_RS00645at 118.606 kb on - strand, within MMP_RS00645at 118.809 kb on - strand, within MMP_RS00645at 118.952 kb on - strandat 119.214 kb on - strand, within MMP_RS00650at 119.462 kb on - strand, within MMP_RS00650at 119.463 kb on + strand, within MMP_RS00650at 119.681 kb on + strand, within MMP_RS00650at 119.748 kb on + strand, within MMP_RS00650at 119.875 kb on - strand, within MMP_RS00650at 119.875 kb on - strand, within MMP_RS00650at 119.876 kb on + strand, within MMP_RS00650at 119.888 kb on + strand, within MMP_RS00650at 119.976 kb on - strandat 119.978 kb on - strandat 119.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM
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116,435 - -0.1
116,671 + MMP_RS00640 0.31 +0.4
116,761 - MMP_RS00640 0.40 -1.6
116,821 - MMP_RS00640 0.45 +1.0
116,835 - MMP_RS00640 0.47 -0.2
116,849 + MMP_RS00640 0.48 +3.0
116,883 - MMP_RS00640 0.51 +0.0
116,883 - MMP_RS00640 0.51 +0.3
116,889 + MMP_RS00640 0.52 -1.7
116,893 - MMP_RS00640 0.52 +0.0
116,894 + MMP_RS00640 0.53 -0.8
116,894 + MMP_RS00640 0.53 +2.4
117,032 + MMP_RS00640 0.66 +3.3
117,323 - +1.5
117,353 - +0.2
117,353 - +0.3
117,375 + +0.3
117,394 - +1.8
117,767 - MMP_RS00645 0.22 -0.2
117,832 + MMP_RS00645 0.26 +2.9
117,832 + MMP_RS00645 0.26 +1.1
117,833 - MMP_RS00645 0.26 +0.9
118,261 - MMP_RS00645 0.52 -1.9
118,261 - MMP_RS00645 0.52 +2.2
118,262 + MMP_RS00645 0.52 +0.2
118,442 + MMP_RS00645 0.63 +1.7
118,442 + MMP_RS00645 0.63 -0.5
118,496 - MMP_RS00645 0.67 +1.2
118,499 + MMP_RS00645 0.67 +2.0
118,500 - MMP_RS00645 0.67 +0.9
118,501 + MMP_RS00645 0.67 +3.1
118,503 - MMP_RS00645 0.67 -0.7
118,504 + MMP_RS00645 0.67 +0.3
118,606 - MMP_RS00645 0.74 +0.3
118,809 - MMP_RS00645 0.86 -0.1
118,952 - -1.1
119,214 - MMP_RS00650 0.20 +0.5
119,462 - MMP_RS00650 0.45 -0.6
119,463 + MMP_RS00650 0.45 +1.5
119,681 + MMP_RS00650 0.68 +0.5
119,748 + MMP_RS00650 0.75 +3.1
119,875 - MMP_RS00650 0.88 +1.1
119,875 - MMP_RS00650 0.88 -0.4
119,876 + MMP_RS00650 0.88 +0.2
119,888 + MMP_RS00650 0.89 -1.1
119,976 - +1.9
119,978 - +1.5
119,993 - +0.2

Or see this region's nucleotide sequence