Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00565 and MMP_RS00570 are separated by 88 nucleotides MMP_RS00570 and MMP_RS00575 are separated by 118 nucleotides MMP_RS00575 and MMP_RS00580 are separated by 157 nucleotides MMP_RS00580 and MMP_RS00585 are separated by 46 nucleotides MMP_RS00585 and MMP_RS00590 are separated by 8 nucleotides MMP_RS00590 and MMP_RS00595 are separated by 16 nucleotides MMP_RS00595 and MMP_RS00600 are separated by 40 nucleotides MMP_RS00600 and MMP_RS00605 are separated by 16 nucleotides MMP_RS00605 and MMP_RS00610 are separated by 33 nucleotides MMP_RS00610 and MMP_RS00615 are separated by 20 nucleotides
MMP_RS00565: MMP_RS00565 - CBS domain-containing protein, at 110,490 to 110,975
_RS00565
MMP_RS00570: MMP_RS00570 - protein-L-isoaspartate O-methyltransferase, at 111,064 to 111,702
_RS00570
MMP_RS00575: MMP_RS00575 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 111,821 to 112,720
_RS00575
MMP_RS00580: MMP_RS00580 - tRNA-Thr, at 112,878 to 112,951
_RS00580
MMP_RS00585: MMP_RS00585 - tRNA-Pro, at 112,998 to 113,074
_RS00585
MMP_RS00590: MMP_RS00590 - tRNA-Tyr, at 113,083 to 113,156
_RS00590
MMP_RS00595: MMP_RS00595 - tRNA-Lys, at 113,173 to 113,246
_RS00595
MMP_RS00600: MMP_RS00600 - 5S ribosomal RNA, at 113,287 to 113,401
_RS00600
MMP_RS00605: MMP_RS00605 - tRNA-Asp, at 113,418 to 113,492
_RS00605
MMP_RS00610: MMP_RS00610 - tRNA-Lys, at 113,526 to 113,599
_RS00610
MMP_RS00615: MMP_RS00615 - tRNA-Asp, at 113,620 to 113,694
_RS00615
Position (kb)
111
112
113 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 110.823 kb on - strand, within MMP_RS00565 at 110.882 kb on - strand, within MMP_RS00565 at 110.934 kb on + strand at 110.944 kb on - strand at 111.004 kb on - strand at 111.004 kb on - strand at 111.005 kb on + strand at 111.005 kb on + strand at 111.006 kb on - strand at 111.006 kb on - strand at 111.006 kb on - strand at 111.007 kb on + strand at 111.007 kb on + strand at 111.007 kb on + strand at 111.007 kb on + strand at 111.007 kb on + strand at 111.022 kb on - strand at 111.024 kb on - strand at 111.024 kb on - strand at 111.025 kb on + strand at 111.025 kb on + strand at 111.025 kb on + strand at 111.061 kb on - strand at 111.061 kb on - strand at 111.072 kb on + strand at 111.072 kb on + strand at 111.115 kb on - strand at 111.237 kb on - strand, within MMP_RS00570 at 111.302 kb on - strand, within MMP_RS00570 at 111.700 kb on - strand at 111.786 kb on - strand at 111.789 kb on - strand at 112.635 kb on - strand at 112.669 kb on - strand at 112.734 kb on - strand at 112.734 kb on - strand at 112.751 kb on - strand at 112.752 kb on + strand at 112.777 kb on - strand at 112.798 kb on - strand at 112.798 kb on - strand at 112.799 kb on + strand at 112.799 kb on + strand at 112.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 110,823 - MMP_RS00565 0.69 +2.3 110,882 - MMP_RS00565 0.81 -0.9 110,934 + +2.3 110,944 - -0.4 111,004 - +1.9 111,004 - -2.4 111,005 + +0.3 111,005 + +1.7 111,006 - +1.4 111,006 - +1.3 111,006 - +1.1 111,007 + +0.8 111,007 + +1.6 111,007 + +2.0 111,007 + -1.8 111,007 + -0.3 111,022 - +1.2 111,024 - +2.4 111,024 - +2.6 111,025 + -2.0 111,025 + +0.0 111,025 + +1.5 111,061 - +0.4 111,061 - +1.5 111,072 + -0.0 111,072 + +1.5 111,115 - +1.1 111,237 - MMP_RS00570 0.27 -0.6 111,302 - MMP_RS00570 0.37 +0.1 111,700 - +1.5 111,786 - -0.4 111,789 - -0.9 112,635 - -2.9 112,669 - -4.1 112,734 - +0.2 112,734 - -1.4 112,751 - +0.8 112,752 + +0.3 112,777 - +0.5 112,798 - +0.8 112,798 - +0.0 112,799 + -0.4 112,799 + +1.5 112,809 - -0.7
Or see this region's nucleotide sequence