Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00230 and MMP_RS00235 are separated by 10 nucleotides MMP_RS00235 and MMP_RS00240 are separated by 26 nucleotides MMP_RS00240 and MMP_RS00245 are separated by 4 nucleotides
MMP_RS00230: MMP_RS00230 - transcription factor E, at 53,793 to 54,350
_RS00230
MMP_RS00235: MMP_RS00235 - HDIG domain-containing protein, at 54,361 to 54,948
_RS00235
MMP_RS00240: MMP_RS00240 - type II secretion system F family protein, at 54,975 to 55,871
_RS00240
MMP_RS00245: MMP_RS00245 - type II secretion system F family protein, at 55,876 to 56,934
_RS00245
Position (kb) 54
55
56 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 54.016 kb on + strand at 54.054 kb on - strand at 54.055 kb on + strand at 54.140 kb on + strand at 54.155 kb on - strand at 54.225 kb on + strand at 54.252 kb on - strand at 54.253 kb on + strand at 54.307 kb on - strand at 54.342 kb on + strand at 54.345 kb on - strand at 54.345 kb on - strand at 54.345 kb on - strand at 54.360 kb on - strand at 54.361 kb on + strand at 54.367 kb on + strand at 54.386 kb on - strand at 54.386 kb on - strand at 54.396 kb on - strand at 54.402 kb on + strand at 54.402 kb on + strand at 54.402 kb on + strand at 54.441 kb on + strand, within MMP_RS00235 at 54.444 kb on - strand, within MMP_RS00235 at 54.551 kb on - strand, within MMP_RS00235 at 54.575 kb on - strand, within MMP_RS00235 at 54.647 kb on - strand, within MMP_RS00235 at 54.662 kb on - strand, within MMP_RS00235 at 54.666 kb on + strand, within MMP_RS00235 at 54.668 kb on - strand, within MMP_RS00235 at 54.692 kb on + strand, within MMP_RS00235 at 54.732 kb on - strand, within MMP_RS00235 at 54.772 kb on - strand, within MMP_RS00235 at 54.773 kb on + strand, within MMP_RS00235 at 54.821 kb on - strand, within MMP_RS00235 at 54.907 kb on - strand at 54.920 kb on - strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.931 kb on + strand at 54.936 kb on + strand at 54.947 kb on + strand at 54.947 kb on + strand at 54.977 kb on + strand at 54.977 kb on + strand at 54.984 kb on - strand at 54.996 kb on + strand at 55.005 kb on - strand at 55.005 kb on - strand at 55.041 kb on - strand at 55.042 kb on + strand at 55.052 kb on - strand at 55.057 kb on + strand at 55.065 kb on + strand, within MMP_RS00240 at 55.068 kb on - strand, within MMP_RS00240 at 55.150 kb on + strand, within MMP_RS00240 at 55.254 kb on - strand, within MMP_RS00240 at 55.290 kb on - strand, within MMP_RS00240 at 55.369 kb on - strand, within MMP_RS00240 at 55.410 kb on - strand, within MMP_RS00240 at 55.440 kb on - strand, within MMP_RS00240 at 55.440 kb on - strand, within MMP_RS00240 at 55.440 kb on - strand, within MMP_RS00240 at 55.441 kb on + strand, within MMP_RS00240 at 55.441 kb on + strand, within MMP_RS00240 at 55.441 kb on + strand, within MMP_RS00240 at 55.484 kb on - strand, within MMP_RS00240 at 55.504 kb on + strand, within MMP_RS00240 at 55.504 kb on + strand, within MMP_RS00240 at 55.530 kb on - strand, within MMP_RS00240 at 55.531 kb on + strand, within MMP_RS00240 at 55.591 kb on - strand, within MMP_RS00240 at 55.591 kb on - strand, within MMP_RS00240 at 55.592 kb on + strand, within MMP_RS00240 at 55.592 kb on + strand, within MMP_RS00240 at 55.601 kb on - strand, within MMP_RS00240 at 55.607 kb on - strand, within MMP_RS00240 at 55.639 kb on - strand, within MMP_RS00240 at 55.672 kb on + strand, within MMP_RS00240 at 55.678 kb on + strand, within MMP_RS00240 at 55.698 kb on + strand, within MMP_RS00240 at 55.831 kb on + strand at 55.840 kb on - strand at 55.840 kb on - strand at 55.840 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.843 kb on + strand at 55.844 kb on - strand at 55.844 kb on - strand at 55.844 kb on - strand at 55.844 kb on - strand at 55.845 kb on + strand at 55.851 kb on - strand at 55.852 kb on + strand at 55.855 kb on - strand at 55.906 kb on + strand at 55.906 kb on + strand at 55.909 kb on - strand at 56.151 kb on - strand, within MMP_RS00245 at 56.152 kb on + strand, within MMP_RS00245 at 56.193 kb on - strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.197 kb on - strand, within MMP_RS00245 at 56.198 kb on + strand, within MMP_RS00245 at 56.202 kb on - strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.266 kb on - strand, within MMP_RS00245 at 56.267 kb on + strand, within MMP_RS00245 at 56.268 kb on - strand, within MMP_RS00245 at 56.272 kb on + strand, within MMP_RS00245 at 56.356 kb on - strand, within MMP_RS00245 at 56.367 kb on - strand, within MMP_RS00245 at 56.374 kb on - strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.377 kb on - strand, within MMP_RS00245 at 56.443 kb on - strand, within MMP_RS00245 at 56.444 kb on + strand, within MMP_RS00245 at 56.461 kb on + strand, within MMP_RS00245 at 56.464 kb on + strand, within MMP_RS00245 at 56.501 kb on + strand, within MMP_RS00245 at 56.576 kb on - strand, within MMP_RS00245 at 56.577 kb on + strand, within MMP_RS00245 at 56.590 kb on - strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.595 kb on - strand, within MMP_RS00245 at 56.620 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.651 kb on - strand, within MMP_RS00245 at 56.707 kb on - strand, within MMP_RS00245 at 56.708 kb on + strand, within MMP_RS00245 at 56.716 kb on - strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.728 kb on - strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.750 kb on - strand, within MMP_RS00245 at 56.751 kb on + strand, within MMP_RS00245 at 56.759 kb on - strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.768 kb on + strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.782 kb on + strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.788 kb on + strand, within MMP_RS00245 at 56.822 kb on - strand, within MMP_RS00245 at 56.842 kb on + strand at 56.842 kb on + strand at 56.846 kb on + strand at 56.868 kb on - strand at 56.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 54,016 + -2.2 54,054 - -1.3 54,055 + -3.3 54,140 + +0.3 54,155 - -3.4 54,225 + -3.8 54,252 - -1.0 54,253 + -2.6 54,307 - +0.1 54,342 + +1.9 54,345 - +2.5 54,345 - +1.2 54,345 - +0.5 54,360 - -0.1 54,361 + -2.3 54,367 + +0.0 54,386 - +0.4 54,386 - -1.5 54,396 - +0.2 54,402 + +0.3 54,402 + -0.1 54,402 + +1.2 54,441 + MMP_RS00235 0.14 +1.1 54,444 - MMP_RS00235 0.14 +1.4 54,551 - MMP_RS00235 0.32 -1.2 54,575 - MMP_RS00235 0.36 +1.4 54,647 - MMP_RS00235 0.49 -0.8 54,662 - MMP_RS00235 0.51 +0.2 54,666 + MMP_RS00235 0.52 +1.1 54,668 - MMP_RS00235 0.52 +0.4 54,692 + MMP_RS00235 0.56 +2.5 54,732 - MMP_RS00235 0.63 +0.2 54,772 - MMP_RS00235 0.70 +0.5 54,773 + MMP_RS00235 0.70 -1.1 54,821 - MMP_RS00235 0.78 +0.5 54,907 - -0.6 54,920 - -0.4 54,930 - -0.4 54,930 - -1.6 54,930 - -0.5 54,931 + -0.2 54,936 + +0.7 54,947 + +1.0 54,947 + +1.1 54,977 + +2.0 54,977 + +0.1 54,984 - -1.2 54,996 + -1.3 55,005 - -1.7 55,005 - -1.2 55,041 - -1.5 55,042 + -0.9 55,052 - -2.2 55,057 + -1.3 55,065 + MMP_RS00240 0.10 -2.0 55,068 - MMP_RS00240 0.10 -2.2 55,150 + MMP_RS00240 0.20 -1.4 55,254 - MMP_RS00240 0.31 -1.8 55,290 - MMP_RS00240 0.35 -1.8 55,369 - MMP_RS00240 0.44 -0.6 55,410 - MMP_RS00240 0.48 -1.3 55,440 - MMP_RS00240 0.52 -2.7 55,440 - MMP_RS00240 0.52 -1.2 55,440 - MMP_RS00240 0.52 -1.3 55,441 + MMP_RS00240 0.52 -2.1 55,441 + MMP_RS00240 0.52 -2.2 55,441 + MMP_RS00240 0.52 -2.1 55,484 - MMP_RS00240 0.57 -1.1 55,504 + MMP_RS00240 0.59 -1.8 55,504 + MMP_RS00240 0.59 -2.1 55,530 - MMP_RS00240 0.62 -1.4 55,531 + MMP_RS00240 0.62 -0.9 55,591 - MMP_RS00240 0.69 -1.9 55,591 - MMP_RS00240 0.69 -1.6 55,592 + MMP_RS00240 0.69 -1.7 55,592 + MMP_RS00240 0.69 -2.3 55,601 - MMP_RS00240 0.70 -1.2 55,607 - MMP_RS00240 0.70 -1.2 55,639 - MMP_RS00240 0.74 -1.0 55,672 + MMP_RS00240 0.78 -3.1 55,678 + MMP_RS00240 0.78 -1.1 55,698 + MMP_RS00240 0.81 -0.5 55,831 + -0.9 55,840 - -0.8 55,840 - -0.9 55,840 - -1.2 55,842 - -1.5 55,842 - -1.5 55,842 - -1.3 55,842 - -0.6 55,842 - -0.7 55,843 + -1.1 55,844 - -0.8 55,844 - -1.9 55,844 - -1.7 55,844 - -1.8 55,845 + -1.2 55,851 - -1.0 55,852 + -1.5 55,855 - -1.2 55,906 + -1.5 55,906 + -0.8 55,909 - -2.0 56,151 - MMP_RS00245 0.26 -2.4 56,152 + MMP_RS00245 0.26 -1.7 56,193 - MMP_RS00245 0.30 -1.0 56,194 + MMP_RS00245 0.30 -1.1 56,194 + MMP_RS00245 0.30 -1.8 56,197 - MMP_RS00245 0.30 -2.6 56,198 + MMP_RS00245 0.30 -2.9 56,202 - MMP_RS00245 0.31 -1.1 56,242 + MMP_RS00245 0.35 -1.4 56,242 + MMP_RS00245 0.35 -2.1 56,266 - MMP_RS00245 0.37 -1.8 56,267 + MMP_RS00245 0.37 -0.8 56,268 - MMP_RS00245 0.37 -1.0 56,272 + MMP_RS00245 0.37 -1.7 56,356 - MMP_RS00245 0.45 -1.5 56,367 - MMP_RS00245 0.46 -1.9 56,374 - MMP_RS00245 0.47 -0.7 56,375 + MMP_RS00245 0.47 -1.4 56,375 + MMP_RS00245 0.47 -1.9 56,377 - MMP_RS00245 0.47 -0.2 56,443 - MMP_RS00245 0.54 -0.2 56,444 + MMP_RS00245 0.54 -1.2 56,461 + MMP_RS00245 0.55 -1.0 56,464 + MMP_RS00245 0.56 -1.1 56,501 + MMP_RS00245 0.59 -1.2 56,576 - MMP_RS00245 0.66 -0.8 56,577 + MMP_RS00245 0.66 -1.8 56,590 - MMP_RS00245 0.67 -1.3 56,591 + MMP_RS00245 0.68 -1.3 56,591 + MMP_RS00245 0.68 -0.7 56,595 - MMP_RS00245 0.68 -0.7 56,620 + MMP_RS00245 0.70 -4.0 56,644 + MMP_RS00245 0.73 -1.0 56,644 + MMP_RS00245 0.73 -2.2 56,651 - MMP_RS00245 0.73 -1.9 56,707 - MMP_RS00245 0.78 -1.9 56,708 + MMP_RS00245 0.79 -1.3 56,716 - MMP_RS00245 0.79 -1.8 56,717 + MMP_RS00245 0.79 -0.4 56,717 + MMP_RS00245 0.79 -2.1 56,725 + MMP_RS00245 0.80 -1.4 56,725 + MMP_RS00245 0.80 -1.5 56,728 - MMP_RS00245 0.80 -1.1 56,749 + MMP_RS00245 0.82 -1.9 56,749 + MMP_RS00245 0.82 -2.1 56,750 - MMP_RS00245 0.83 -0.8 56,751 + MMP_RS00245 0.83 -1.5 56,759 - MMP_RS00245 0.83 -1.2 56,760 + MMP_RS00245 0.83 -1.4 56,760 + MMP_RS00245 0.83 -2.0 56,768 + MMP_RS00245 0.84 -1.4 56,781 - MMP_RS00245 0.85 -0.9 56,781 - MMP_RS00245 0.85 -2.5 56,781 - MMP_RS00245 0.85 -1.6 56,782 + MMP_RS00245 0.86 -1.6 56,785 - MMP_RS00245 0.86 -0.6 56,785 - MMP_RS00245 0.86 -1.2 56,785 - MMP_RS00245 0.86 -1.1 56,785 - MMP_RS00245 0.86 -1.9 56,786 + MMP_RS00245 0.86 -2.5 56,786 + MMP_RS00245 0.86 -0.9 56,786 + MMP_RS00245 0.86 -1.7 56,786 + MMP_RS00245 0.86 -1.8 56,788 + MMP_RS00245 0.86 -1.2 56,822 - MMP_RS00245 0.89 -1.2 56,842 + -1.0 56,842 + -2.5 56,846 + -0.8 56,868 - -1.5 56,869 + -1.5
Or see this region's nucleotide sequence