Experiment: McCas_H2_complete Hydroxylamine 41.6666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04165 and MMP_RS04170 are separated by 139 nucleotides MMP_RS04170 and MMP_RS04175 overlap by 8 nucleotides
MMP_RS04165: MMP_RS04165 - TetR/AcrR family transcriptional regulator, at 791,640 to 792,218
_RS04165
MMP_RS04170: MMP_RS04170 - DUF362 domain-containing protein, at 792,358 to 793,440
_RS04170
MMP_RS04175: MMP_RS04175 - permease, at 793,433 to 794,335
_RS04175
Position (kb) 792
793
794 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 791.389 kb on + strand at 791.443 kb on - strand at 791.444 kb on + strand at 791.445 kb on - strand at 791.446 kb on + strand at 791.446 kb on + strand at 791.501 kb on - strand at 791.504 kb on - strand at 791.513 kb on - strand at 791.514 kb on + strand at 791.517 kb on - strand at 791.521 kb on - strand at 791.552 kb on + strand at 791.566 kb on + strand at 791.569 kb on - strand at 791.569 kb on - strand at 791.570 kb on + strand at 791.582 kb on + strand at 791.590 kb on + strand at 791.592 kb on - strand at 791.598 kb on + strand at 791.635 kb on - strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.637 kb on - strand at 791.637 kb on - strand at 791.637 kb on - strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.640 kb on + strand at 792.005 kb on + strand, within MMP_RS04165 at 792.016 kb on + strand, within MMP_RS04165 at 792.074 kb on + strand, within MMP_RS04165 at 792.124 kb on - strand, within MMP_RS04165 at 792.171 kb on + strand at 792.273 kb on + strand at 792.273 kb on + strand at 792.295 kb on - strand at 792.341 kb on - strand at 792.365 kb on - strand at 792.379 kb on + strand at 792.398 kb on - strand at 792.401 kb on - strand at 792.405 kb on + strand at 792.426 kb on - strand at 792.427 kb on + strand at 792.427 kb on + strand at 792.427 kb on + strand at 792.462 kb on - strand at 792.488 kb on - strand, within MMP_RS04170 at 792.489 kb on + strand, within MMP_RS04170 at 792.493 kb on + strand, within MMP_RS04170 at 792.493 kb on + strand, within MMP_RS04170 at 792.495 kb on - strand, within MMP_RS04170 at 792.495 kb on - strand, within MMP_RS04170 at 792.531 kb on - strand, within MMP_RS04170 at 792.534 kb on - strand, within MMP_RS04170 at 792.617 kb on + strand, within MMP_RS04170 at 792.651 kb on + strand, within MMP_RS04170 at 792.688 kb on + strand, within MMP_RS04170 at 792.691 kb on - strand, within MMP_RS04170 at 792.691 kb on - strand, within MMP_RS04170 at 792.695 kb on - strand, within MMP_RS04170 at 792.696 kb on + strand, within MMP_RS04170 at 792.722 kb on - strand, within MMP_RS04170 at 792.729 kb on + strand, within MMP_RS04170 at 792.795 kb on - strand, within MMP_RS04170 at 792.803 kb on - strand, within MMP_RS04170 at 792.822 kb on - strand, within MMP_RS04170 at 792.828 kb on - strand, within MMP_RS04170 at 793.060 kb on - strand, within MMP_RS04170 at 793.061 kb on + strand, within MMP_RS04170 at 793.062 kb on - strand, within MMP_RS04170 at 793.062 kb on - strand, within MMP_RS04170 at 793.098 kb on - strand, within MMP_RS04170 at 793.152 kb on + strand, within MMP_RS04170 at 793.172 kb on - strand, within MMP_RS04170 at 793.172 kb on - strand, within MMP_RS04170 at 793.173 kb on + strand, within MMP_RS04170 at 793.173 kb on + strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.194 kb on - strand, within MMP_RS04170 at 793.195 kb on + strand, within MMP_RS04170 at 793.252 kb on + strand, within MMP_RS04170 at 793.301 kb on - strand, within MMP_RS04170 at 793.371 kb on - strand at 793.444 kb on + strand at 793.475 kb on - strand at 793.476 kb on + strand at 793.661 kb on - strand, within MMP_RS04175 at 793.662 kb on + strand, within MMP_RS04175 at 793.670 kb on + strand, within MMP_RS04175 at 793.693 kb on - strand, within MMP_RS04175 at 793.741 kb on - strand, within MMP_RS04175 at 793.750 kb on + strand, within MMP_RS04175 at 793.770 kb on + strand, within MMP_RS04175 at 793.770 kb on + strand, within MMP_RS04175 at 793.770 kb on + strand, within MMP_RS04175 at 793.860 kb on - strand, within MMP_RS04175 at 793.906 kb on - strand, within MMP_RS04175 at 793.906 kb on - strand, within MMP_RS04175 at 793.945 kb on + strand, within MMP_RS04175 at 793.967 kb on + strand, within MMP_RS04175 at 793.986 kb on + strand, within MMP_RS04175 at 794.027 kb on - strand, within MMP_RS04175 at 794.027 kb on - strand, within MMP_RS04175 at 794.028 kb on + strand, within MMP_RS04175 at 794.028 kb on + strand, within MMP_RS04175 at 794.113 kb on + strand, within MMP_RS04175 at 794.114 kb on - strand, within MMP_RS04175 at 794.131 kb on - strand, within MMP_RS04175 at 794.146 kb on - strand, within MMP_RS04175 at 794.147 kb on + strand, within MMP_RS04175 at 794.274 kb on + strand at 794.285 kb on + strand at 794.291 kb on + strand at 794.291 kb on + strand at 794.293 kb on + strand at 794.333 kb on - strand at 794.333 kb on - strand at 794.334 kb on + strand at 794.368 kb on - strand at 794.373 kb on + strand at 794.395 kb on + strand at 794.399 kb on + strand at 794.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Hydroxylamine 41.6666666666667 mM remove 791,389 + -0.5 791,443 - +0.4 791,444 + +0.5 791,445 - -3.9 791,446 + +0.4 791,446 + +0.0 791,501 - -0.3 791,504 - +0.1 791,513 - +0.2 791,514 + -0.3 791,517 - +0.2 791,521 - +0.5 791,552 + +0.1 791,566 + +0.3 791,569 - +0.6 791,569 - -0.7 791,570 + -0.8 791,582 + -0.5 791,590 + -0.3 791,592 - -0.2 791,598 + +0.8 791,635 - -2.5 791,636 + -1.0 791,636 + +0.1 791,636 + -0.3 791,637 - +0.3 791,637 - -0.0 791,637 - +0.4 791,638 + -1.6 791,638 + +0.1 791,638 + -0.0 791,638 + -1.5 791,638 + +1.1 791,640 + -0.5 792,005 + MMP_RS04165 0.63 -0.3 792,016 + MMP_RS04165 0.65 +0.5 792,074 + MMP_RS04165 0.75 +0.7 792,124 - MMP_RS04165 0.84 +0.5 792,171 + -0.8 792,273 + +0.4 792,273 + -0.4 792,295 - -0.2 792,341 - +0.2 792,365 - +0.1 792,379 + -1.3 792,398 - -1.7 792,401 - -0.7 792,405 + +0.1 792,426 - +1.3 792,427 + -0.3 792,427 + -0.0 792,427 + -0.7 792,462 - -0.0 792,488 - MMP_RS04170 0.12 -0.2 792,489 + MMP_RS04170 0.12 -0.7 792,493 + MMP_RS04170 0.12 +0.2 792,493 + MMP_RS04170 0.12 -0.8 792,495 - MMP_RS04170 0.13 +0.1 792,495 - MMP_RS04170 0.13 +0.3 792,531 - MMP_RS04170 0.16 +0.2 792,534 - MMP_RS04170 0.16 -1.2 792,617 + MMP_RS04170 0.24 -2.2 792,651 + MMP_RS04170 0.27 -0.5 792,688 + MMP_RS04170 0.30 -0.6 792,691 - MMP_RS04170 0.31 -0.3 792,691 - MMP_RS04170 0.31 -0.1 792,695 - MMP_RS04170 0.31 -0.6 792,696 + MMP_RS04170 0.31 -0.8 792,722 - MMP_RS04170 0.34 +0.5 792,729 + MMP_RS04170 0.34 +0.1 792,795 - MMP_RS04170 0.40 +0.0 792,803 - MMP_RS04170 0.41 +1.0 792,822 - MMP_RS04170 0.43 -0.5 792,828 - MMP_RS04170 0.43 -0.8 793,060 - MMP_RS04170 0.65 -0.3 793,061 + MMP_RS04170 0.65 -1.1 793,062 - MMP_RS04170 0.65 -0.6 793,062 - MMP_RS04170 0.65 -3.3 793,098 - MMP_RS04170 0.68 -0.8 793,152 + MMP_RS04170 0.73 -0.8 793,172 - MMP_RS04170 0.75 +0.6 793,172 - MMP_RS04170 0.75 +0.0 793,173 + MMP_RS04170 0.75 +1.0 793,173 + MMP_RS04170 0.75 +0.3 793,190 - MMP_RS04170 0.77 -0.6 793,190 - MMP_RS04170 0.77 -0.2 793,190 - MMP_RS04170 0.77 +0.5 793,194 - MMP_RS04170 0.77 -1.0 793,195 + MMP_RS04170 0.77 -0.2 793,252 + MMP_RS04170 0.83 -0.6 793,301 - MMP_RS04170 0.87 -1.3 793,371 - +0.3 793,444 + +0.2 793,475 - -0.9 793,476 + +1.3 793,661 - MMP_RS04175 0.25 +0.0 793,662 + MMP_RS04175 0.25 -0.1 793,670 + MMP_RS04175 0.26 -0.1 793,693 - MMP_RS04175 0.29 -0.6 793,741 - MMP_RS04175 0.34 +0.1 793,750 + MMP_RS04175 0.35 +0.3 793,770 + MMP_RS04175 0.37 +0.1 793,770 + MMP_RS04175 0.37 -2.0 793,770 + MMP_RS04175 0.37 -0.0 793,860 - MMP_RS04175 0.47 +0.1 793,906 - MMP_RS04175 0.52 -0.6 793,906 - MMP_RS04175 0.52 +0.3 793,945 + MMP_RS04175 0.57 -0.9 793,967 + MMP_RS04175 0.59 -0.6 793,986 + MMP_RS04175 0.61 -0.1 794,027 - MMP_RS04175 0.66 -2.0 794,027 - MMP_RS04175 0.66 +0.4 794,028 + MMP_RS04175 0.66 +0.2 794,028 + MMP_RS04175 0.66 -0.3 794,113 + MMP_RS04175 0.75 +0.0 794,114 - MMP_RS04175 0.75 -0.2 794,131 - MMP_RS04175 0.77 -0.3 794,146 - MMP_RS04175 0.79 -0.6 794,147 + MMP_RS04175 0.79 -0.5 794,274 + +0.3 794,285 + +0.0 794,291 + -1.0 794,291 + -0.7 794,293 + +0.1 794,333 - -0.7 794,333 - -0.2 794,334 + +0.9 794,368 - +0.1 794,373 + +0.5 794,395 + +1.6 794,399 + -0.3 794,409 - +0.1
Or see this region's nucleotide sequence