Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03820

Experiment: McCas_H2_complete Hydroxylamine 41.6666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03815 and MMP_RS03820 are separated by 125 nucleotidesMMP_RS03820 and MMP_RS03825 are separated by 9 nucleotidesMMP_RS03825 and MMP_RS03830 are separated by 22 nucleotides MMP_RS03815: MMP_RS03815 - excinuclease ABC subunit UvrA, at 721,032 to 723,887 _RS03815 MMP_RS03820: MMP_RS03820 - EamA family transporter, at 724,013 to 724,432 _RS03820 MMP_RS03825: MMP_RS03825 - exodeoxyribonuclease VII small subunit, at 724,442 to 724,645 _RS03825 MMP_RS03830: MMP_RS03830 - exodeoxyribonuclease VII large subunit, at 724,668 to 725,891 _RS03830 Position (kb) 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1at 723.013 kb on + strand, within MMP_RS03815at 723.177 kb on + strand, within MMP_RS03815at 723.515 kb on - strand, within MMP_RS03815at 723.680 kb on - strandat 723.710 kb on + strandat 723.730 kb on - strandat 723.730 kb on - strandat 723.815 kb on - strandat 723.870 kb on - strandat 723.870 kb on - strandat 723.891 kb on - strandat 723.903 kb on - strandat 723.921 kb on - strandat 723.922 kb on + strandat 723.930 kb on + strandat 723.935 kb on - strandat 723.946 kb on + strandat 723.985 kb on - strandat 724.014 kb on - strandat 724.094 kb on - strand, within MMP_RS03820at 724.110 kb on + strand, within MMP_RS03820at 724.223 kb on - strand, within MMP_RS03820at 724.228 kb on + strand, within MMP_RS03820at 724.262 kb on - strand, within MMP_RS03820at 724.263 kb on + strand, within MMP_RS03820at 724.280 kb on - strand, within MMP_RS03820at 724.288 kb on - strand, within MMP_RS03820at 724.289 kb on + strand, within MMP_RS03820at 724.289 kb on + strand, within MMP_RS03820at 724.323 kb on - strand, within MMP_RS03820at 724.333 kb on - strand, within MMP_RS03820at 724.334 kb on + strand, within MMP_RS03820at 724.392 kb on + strandat 724.682 kb on - strandat 724.686 kb on + strandat 724.686 kb on + strandat 724.686 kb on + strandat 724.715 kb on - strandat 724.758 kb on - strandat 724.759 kb on + strandat 724.806 kb on - strand, within MMP_RS03830at 724.820 kb on - strand, within MMP_RS03830at 725.072 kb on + strand, within MMP_RS03830at 725.080 kb on - strand, within MMP_RS03830at 725.081 kb on + strand, within MMP_RS03830at 725.081 kb on + strand, within MMP_RS03830at 725.081 kb on + strand, within MMP_RS03830at 725.083 kb on + strand, within MMP_RS03830at 725.122 kb on + strand, within MMP_RS03830

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Hydroxylamine 41.6666666666667 mM
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723,013 + MMP_RS03815 0.69 -1.9
723,177 + MMP_RS03815 0.75 +0.1
723,515 - MMP_RS03815 0.87 +0.8
723,680 - +0.4
723,710 + +1.3
723,730 - +0.6
723,730 - +0.3
723,815 - +0.1
723,870 - +0.4
723,870 - +0.1
723,891 - -0.0
723,903 - -0.4
723,921 - +0.7
723,922 + +1.1
723,930 + +0.3
723,935 - -0.3
723,946 + -0.1
723,985 - +1.1
724,014 - -1.3
724,094 - MMP_RS03820 0.19 -0.1
724,110 + MMP_RS03820 0.23 -0.3
724,223 - MMP_RS03820 0.50 -0.7
724,228 + MMP_RS03820 0.51 -0.8
724,262 - MMP_RS03820 0.59 +0.1
724,263 + MMP_RS03820 0.60 +0.4
724,280 - MMP_RS03820 0.64 -0.8
724,288 - MMP_RS03820 0.65 -1.4
724,289 + MMP_RS03820 0.66 +0.1
724,289 + MMP_RS03820 0.66 -0.9
724,323 - MMP_RS03820 0.74 -2.5
724,333 - MMP_RS03820 0.76 -0.0
724,334 + MMP_RS03820 0.76 -0.1
724,392 + -0.4
724,682 - +0.8
724,686 + -3.0
724,686 + +0.3
724,686 + -0.9
724,715 - -2.7
724,758 - +1.7
724,759 + -1.3
724,806 - MMP_RS03830 0.11 -1.3
724,820 - MMP_RS03830 0.12 +1.2
725,072 + MMP_RS03830 0.33 -0.7
725,080 - MMP_RS03830 0.34 +0.5
725,081 + MMP_RS03830 0.34 -1.4
725,081 + MMP_RS03830 0.34 +0.2
725,081 + MMP_RS03830 0.34 +0.1
725,083 + MMP_RS03830 0.34 -0.3
725,122 + MMP_RS03830 0.37 -0.1

Or see this region's nucleotide sequence