Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05010

Experiment: McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS05005 and MMP_RS05010 are separated by 256 nucleotidesMMP_RS05010 and MMP_RS05015 are separated by 18 nucleotides MMP_RS05005: MMP_RS05005 - uroporphyrinogen-III C-methyltransferase, at 953,174 to 953,893 _RS05005 MMP_RS05010: MMP_RS05010 - KEOPS complex subunit Cgi121, at 954,150 to 954,581 _RS05010 MMP_RS05015: MMP_RS05015 - histidinol dehydrogenase, at 954,600 to 955,874 _RS05015 Position (kb) 954 955Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 953.160 kb on + strandat 953.175 kb on - strandat 953.175 kb on - strandat 953.186 kb on - strandat 953.186 kb on - strandat 953.187 kb on + strandat 953.187 kb on + strandat 953.206 kb on - strandat 953.393 kb on - strandat 953.393 kb on - strandat 953.574 kb on + strandat 953.588 kb on - strandat 953.924 kb on - strandat 953.925 kb on + strandat 953.925 kb on + strandat 953.934 kb on - strandat 953.934 kb on - strandat 953.935 kb on + strandat 953.963 kb on + strandat 953.967 kb on + strandat 953.968 kb on - strandat 953.969 kb on + strandat 953.988 kb on - strandat 953.988 kb on - strandat 953.989 kb on + strandat 954.022 kb on + strandat 954.046 kb on + strandat 954.049 kb on - strandat 954.050 kb on + strandat 954.050 kb on + strandat 954.052 kb on + strandat 954.061 kb on - strandat 954.069 kb on - strandat 954.069 kb on - strandat 954.071 kb on - strandat 954.074 kb on - strandat 954.080 kb on + strandat 954.138 kb on + strandat 954.157 kb on - strandat 954.268 kb on - strandat 954.269 kb on + strandat 954.271 kb on + strandat 954.294 kb on + strandat 954.322 kb on - strandat 954.650 kb on + strandat 954.791 kb on + strandat 954.839 kb on + strandat 954.979 kb on + strandat 955.060 kb on - strandat 955.394 kb on - strandat 955.394 kb on - strandat 955.401 kb on + strandat 955.554 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete potassium hexahydroxoantimonate 0.125 mM
remove
953,160 + +1.0
953,175 - +1.0
953,175 - +0.2
953,186 - -1.2
953,186 - -0.8
953,187 + -1.0
953,187 + -3.1
953,206 - -1.5
953,393 - -2.6
953,393 - -1.3
953,574 + -2.7
953,588 - -0.2
953,924 - -1.3
953,925 + -2.5
953,925 + -1.3
953,934 - +0.6
953,934 - -1.7
953,935 + -4.0
953,963 + -0.5
953,967 + +0.7
953,968 - -0.6
953,969 + +0.7
953,988 - -1.0
953,988 - -1.0
953,989 + +2.8
954,022 + +2.2
954,046 + +1.0
954,049 - +0.8
954,050 + -2.3
954,050 + -0.3
954,052 + -1.4
954,061 - -2.3
954,069 - -0.0
954,069 - -3.2
954,071 - -3.5
954,074 - -0.6
954,080 + +1.1
954,138 + -2.0
954,157 - -1.5
954,268 - -2.2
954,269 + -1.2
954,271 + -1.9
954,294 + -1.2
954,322 - -0.7
954,650 + -2.2
954,791 + -3.6
954,839 + -1.1
954,979 + +0.2
955,060 - +0.0
955,394 - -2.8
955,394 - -1.2
955,401 + -3.1
955,554 - -3.6

Or see this region's nucleotide sequence