Experiment: McCas_H2_complete Rifampicin 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04645 and MMP_RS04650 are separated by 123 nucleotides MMP_RS04650 and MMP_RS04655 are separated by 21 nucleotides MMP_RS04655 and MMP_RS04660 are separated by 100 nucleotides
MMP_RS04645: MMP_RS04645 - glutamine-hydrolyzing GMP synthase, at 887,183 to 888,115
_RS04645
MMP_RS04650: MMP_RS04650 - tetratricopeptide repeat protein, at 888,239 to 888,832
_RS04650
MMP_RS04655: MMP_RS04655 - flippase, at 888,854 to 890,125
_RS04655
MMP_RS04660: MMP_RS04660 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 890,226 to 891,452
_RS04660
Position (kb) 888
889
890
891 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 887.953 kb on - strand at 888.152 kb on + strand at 888.155 kb on - strand at 888.156 kb on + strand at 888.162 kb on - strand at 888.162 kb on - strand at 888.162 kb on - strand at 888.163 kb on + strand at 888.166 kb on - strand at 888.167 kb on + strand at 888.167 kb on + strand at 888.193 kb on - strand at 888.193 kb on - strand at 888.194 kb on + strand at 888.194 kb on + strand at 888.194 kb on + strand at 888.292 kb on - strand at 888.458 kb on - strand, within MMP_RS04650 at 888.472 kb on + strand, within MMP_RS04650 at 888.489 kb on - strand, within MMP_RS04650 at 888.524 kb on - strand, within MMP_RS04650 at 888.524 kb on - strand, within MMP_RS04650 at 888.526 kb on - strand, within MMP_RS04650 at 888.586 kb on - strand, within MMP_RS04650 at 888.612 kb on - strand, within MMP_RS04650 at 888.643 kb on - strand, within MMP_RS04650 at 888.653 kb on + strand, within MMP_RS04650 at 888.667 kb on + strand, within MMP_RS04650 at 888.684 kb on - strand, within MMP_RS04650 at 888.695 kb on + strand, within MMP_RS04650 at 888.713 kb on - strand, within MMP_RS04650 at 888.713 kb on - strand, within MMP_RS04650 at 888.714 kb on + strand, within MMP_RS04650 at 888.714 kb on + strand, within MMP_RS04650 at 888.714 kb on + strand, within MMP_RS04650 at 888.868 kb on + strand at 888.899 kb on - strand at 888.899 kb on - strand at 888.900 kb on + strand at 888.900 kb on + strand at 888.900 kb on + strand at 888.920 kb on - strand at 888.965 kb on + strand at 888.990 kb on - strand at 889.015 kb on + strand at 889.023 kb on - strand at 889.024 kb on + strand at 889.106 kb on - strand at 889.112 kb on + strand at 889.201 kb on + strand at 889.320 kb on - strand at 889.320 kb on - strand at 889.393 kb on - strand at 889.461 kb on + strand at 889.487 kb on + strand at 889.528 kb on - strand at 889.530 kb on - strand at 889.530 kb on - strand at 889.530 kb on - strand at 889.531 kb on + strand at 889.533 kb on + strand at 889.594 kb on - strand at 889.602 kb on - strand at 889.627 kb on - strand at 889.702 kb on + strand at 889.788 kb on - strand at 889.840 kb on - strand at 889.841 kb on + strand at 889.892 kb on + strand at 889.897 kb on - strand at 889.902 kb on + strand at 889.903 kb on - strand at 889.903 kb on - strand at 889.904 kb on + strand at 889.904 kb on + strand at 889.908 kb on - strand at 889.956 kb on + strand at 889.956 kb on + strand at 889.956 kb on + strand at 889.956 kb on + strand at 889.998 kb on + strand at 890.015 kb on + strand at 890.086 kb on - strand at 890.086 kb on - strand at 890.087 kb on + strand at 890.092 kb on - strand at 890.093 kb on + strand at 890.093 kb on + strand at 890.093 kb on + strand at 890.114 kb on - strand at 890.115 kb on + strand at 890.115 kb on + strand at 890.116 kb on - strand at 890.116 kb on - strand at 890.117 kb on + strand at 890.117 kb on + strand at 890.119 kb on - strand at 890.119 kb on - strand at 890.123 kb on - strand at 890.173 kb on + strand at 890.176 kb on - strand at 890.176 kb on - strand at 890.177 kb on + strand at 890.177 kb on + strand at 890.200 kb on - strand at 890.263 kb on - strand at 890.307 kb on - strand at 890.594 kb on - strand at 890.595 kb on + strand at 890.716 kb on - strand at 890.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Rifampicin 0.5 mM remove 887,953 - -4.1 888,152 + +0.7 888,155 - +0.9 888,156 + +0.0 888,162 - -1.7 888,162 - +0.8 888,162 - -0.0 888,163 + +0.8 888,166 - -2.0 888,167 + +0.2 888,167 + -0.3 888,193 - +0.2 888,193 - -1.9 888,194 + -0.2 888,194 + -2.7 888,194 + -0.2 888,292 - -0.0 888,458 - MMP_RS04650 0.37 +0.5 888,472 + MMP_RS04650 0.39 -0.3 888,489 - MMP_RS04650 0.42 +0.8 888,524 - MMP_RS04650 0.48 -1.1 888,524 - MMP_RS04650 0.48 -1.0 888,526 - MMP_RS04650 0.48 -1.2 888,586 - MMP_RS04650 0.58 -2.3 888,612 - MMP_RS04650 0.63 -1.0 888,643 - MMP_RS04650 0.68 +0.1 888,653 + MMP_RS04650 0.70 -0.2 888,667 + MMP_RS04650 0.72 -1.0 888,684 - MMP_RS04650 0.75 -0.4 888,695 + MMP_RS04650 0.77 -0.5 888,713 - MMP_RS04650 0.80 -0.5 888,713 - MMP_RS04650 0.80 -1.4 888,714 + MMP_RS04650 0.80 -0.8 888,714 + MMP_RS04650 0.80 +0.3 888,714 + MMP_RS04650 0.80 -0.2 888,868 + -2.2 888,899 - -2.7 888,899 - -2.5 888,900 + -2.7 888,900 + -2.7 888,900 + -1.7 888,920 - -1.5 888,965 + -0.6 888,990 - -1.6 889,015 + -1.3 889,023 - -1.4 889,024 + -1.0 889,106 - -2.9 889,112 + +0.0 889,201 + +0.1 889,320 - -1.2 889,320 - -1.1 889,393 - -1.4 889,461 + -2.0 889,487 + -0.9 889,528 - -4.7 889,530 - -2.7 889,530 - -2.4 889,530 - -1.4 889,531 + +1.6 889,533 + -2.9 889,594 - -0.7 889,602 - -2.1 889,627 - -1.2 889,702 + -1.7 889,788 - -1.1 889,840 - -0.2 889,841 + -1.1 889,892 + -3.8 889,897 - -3.2 889,902 + -1.6 889,903 - -1.1 889,903 - -2.4 889,904 + -1.0 889,904 + -1.9 889,908 - -1.7 889,956 + -2.9 889,956 + -1.3 889,956 + -0.6 889,956 + -3.0 889,998 + -1.1 890,015 + -2.3 890,086 - -3.5 890,086 - -3.1 890,087 + -0.7 890,092 - -0.8 890,093 + -0.2 890,093 + +1.9 890,093 + -1.6 890,114 - +0.4 890,115 + +0.9 890,115 + +0.0 890,116 - -1.0 890,116 - -0.5 890,117 + -0.4 890,117 + -0.4 890,119 - -1.1 890,119 - +1.3 890,123 - +1.2 890,173 + -0.6 890,176 - -1.6 890,176 - -2.9 890,177 + -1.3 890,177 + -0.7 890,200 - -0.2 890,263 - -1.1 890,307 - -4.3 890,594 - -1.2 890,595 + -1.5 890,716 - -1.7 890,906 - -0.6
Or see this region's nucleotide sequence