Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04525

Experiment: McCas_H2_complete Irgasan 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04515 and MMP_RS04520 are separated by 443 nucleotidesMMP_RS04520 and MMP_RS04525 are separated by 31 nucleotidesMMP_RS04525 and MMP_RS04530 are separated by 41 nucleotides MMP_RS04515: MMP_RS04515 - betaine/proline/choline family ABC transporter ATP-binding protein, at 859,546 to 860,715 _RS04515 MMP_RS04520: MMP_RS04520 - nucleoside deaminase, at 861,159 to 861,596 _RS04520 MMP_RS04525: MMP_RS04525 - D-2-hydroxyacid dehydrogenase, at 861,628 to 862,584 _RS04525 MMP_RS04530: MMP_RS04530 - ABC transporter permease, at 862,626 to 863,819 _RS04530 Position (kb) 861 862 863Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 860.703 kb on - strandat 860.704 kb on + strandat 860.716 kb on + strandat 860.717 kb on - strandat 860.766 kb on - strandat 860.795 kb on - strandat 860.796 kb on + strandat 860.819 kb on + strandat 860.837 kb on + strandat 860.837 kb on + strandat 860.848 kb on - strandat 860.855 kb on - strandat 860.856 kb on + strandat 860.875 kb on - strandat 860.880 kb on - strandat 860.881 kb on + strandat 860.885 kb on + strandat 860.943 kb on + strandat 861.008 kb on + strandat 861.088 kb on - strandat 861.088 kb on - strandat 861.088 kb on - strandat 861.397 kb on - strand, within MMP_RS04520at 861.423 kb on - strand, within MMP_RS04520at 861.514 kb on - strand, within MMP_RS04520at 861.599 kb on - strandat 861.642 kb on + strandat 861.715 kb on - strandat 861.715 kb on - strandat 861.716 kb on + strandat 861.740 kb on - strand, within MMP_RS04525at 861.774 kb on - strand, within MMP_RS04525at 861.775 kb on + strand, within MMP_RS04525at 861.780 kb on - strand, within MMP_RS04525at 861.781 kb on + strand, within MMP_RS04525at 861.786 kb on + strand, within MMP_RS04525at 861.786 kb on + strand, within MMP_RS04525at 861.825 kb on + strand, within MMP_RS04525at 861.829 kb on - strand, within MMP_RS04525at 861.829 kb on - strand, within MMP_RS04525at 861.829 kb on - strand, within MMP_RS04525at 861.830 kb on + strand, within MMP_RS04525at 861.840 kb on - strand, within MMP_RS04525at 861.853 kb on - strand, within MMP_RS04525at 861.894 kb on + strand, within MMP_RS04525at 861.900 kb on + strand, within MMP_RS04525at 861.945 kb on + strand, within MMP_RS04525at 861.956 kb on - strand, within MMP_RS04525at 861.956 kb on - strand, within MMP_RS04525at 861.957 kb on + strand, within MMP_RS04525at 861.985 kb on - strand, within MMP_RS04525at 861.985 kb on - strand, within MMP_RS04525at 861.986 kb on + strand, within MMP_RS04525at 861.986 kb on + strand, within MMP_RS04525at 861.987 kb on - strand, within MMP_RS04525at 861.999 kb on + strand, within MMP_RS04525at 862.145 kb on - strand, within MMP_RS04525at 862.145 kb on - strand, within MMP_RS04525at 862.145 kb on - strand, within MMP_RS04525at 862.146 kb on + strand, within MMP_RS04525at 862.146 kb on + strand, within MMP_RS04525at 862.146 kb on + strand, within MMP_RS04525at 862.152 kb on + strand, within MMP_RS04525at 862.152 kb on + strand, within MMP_RS04525at 862.446 kb on + strand, within MMP_RS04525at 862.446 kb on + strand, within MMP_RS04525at 862.456 kb on + strand, within MMP_RS04525at 862.461 kb on - strand, within MMP_RS04525at 862.461 kb on - strand, within MMP_RS04525at 862.465 kb on - strand, within MMP_RS04525at 862.465 kb on - strand, within MMP_RS04525at 862.465 kb on - strand, within MMP_RS04525at 862.465 kb on - strand, within MMP_RS04525at 862.466 kb on + strand, within MMP_RS04525at 862.466 kb on + strand, within MMP_RS04525at 862.466 kb on + strand, within MMP_RS04525at 862.467 kb on - strand, within MMP_RS04525at 862.467 kb on - strand, within MMP_RS04525at 862.467 kb on - strand, within MMP_RS04525at 862.467 kb on - strand, within MMP_RS04525at 862.468 kb on + strand, within MMP_RS04525at 862.468 kb on + strand, within MMP_RS04525at 862.468 kb on + strand, within MMP_RS04525at 862.470 kb on + strand, within MMP_RS04525at 862.470 kb on + strand, within MMP_RS04525at 862.470 kb on + strand, within MMP_RS04525at 862.470 kb on + strand, within MMP_RS04525at 862.564 kb on + strandat 862.566 kb on + strandat 862.578 kb on - strandat 862.585 kb on - strandat 862.589 kb on - strandat 862.594 kb on + strandat 862.594 kb on + strandat 862.667 kb on + strandat 862.693 kb on - strandat 862.714 kb on - strandat 862.714 kb on - strandat 862.715 kb on + strandat 862.715 kb on + strandat 862.718 kb on - strandat 862.767 kb on - strand, within MMP_RS04530at 862.771 kb on - strand, within MMP_RS04530at 862.771 kb on - strand, within MMP_RS04530at 862.771 kb on - strand, within MMP_RS04530at 862.883 kb on + strand, within MMP_RS04530at 862.976 kb on + strand, within MMP_RS04530at 863.006 kb on + strand, within MMP_RS04530at 863.263 kb on + strand, within MMP_RS04530at 863.263 kb on + strand, within MMP_RS04530at 863.267 kb on - strand, within MMP_RS04530at 863.309 kb on + strand, within MMP_RS04530at 863.510 kb on - strand, within MMP_RS04530

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Irgasan 0.025 mM
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860,703 - +0.3
860,704 + +1.0
860,716 + +0.2
860,717 - -0.1
860,766 - -0.1
860,795 - +1.2
860,796 + -3.7
860,819 + +0.7
860,837 + +0.3
860,837 + +0.5
860,848 - +0.1
860,855 - -1.1
860,856 + -0.0
860,875 - -1.9
860,880 - +0.9
860,881 + +1.4
860,885 + -0.6
860,943 + -1.0
861,008 + +0.3
861,088 - -0.6
861,088 - -0.6
861,088 - -0.1
861,397 - MMP_RS04520 0.54 +1.1
861,423 - MMP_RS04520 0.60 +0.7
861,514 - MMP_RS04520 0.81 +0.2
861,599 - -0.2
861,642 + +1.0
861,715 - -2.6
861,715 - -1.0
861,716 + -4.5
861,740 - MMP_RS04525 0.12 -0.2
861,774 - MMP_RS04525 0.15 +0.2
861,775 + MMP_RS04525 0.15 -0.6
861,780 - MMP_RS04525 0.16 +0.1
861,781 + MMP_RS04525 0.16 +0.2
861,786 + MMP_RS04525 0.17 -0.5
861,786 + MMP_RS04525 0.17 +0.4
861,825 + MMP_RS04525 0.21 +0.4
861,829 - MMP_RS04525 0.21 +0.3
861,829 - MMP_RS04525 0.21 -1.4
861,829 - MMP_RS04525 0.21 -1.1
861,830 + MMP_RS04525 0.21 -0.4
861,840 - MMP_RS04525 0.22 +1.3
861,853 - MMP_RS04525 0.24 -1.8
861,894 + MMP_RS04525 0.28 -1.2
861,900 + MMP_RS04525 0.28 +0.4
861,945 + MMP_RS04525 0.33 -0.9
861,956 - MMP_RS04525 0.34 -2.1
861,956 - MMP_RS04525 0.34 -0.2
861,957 + MMP_RS04525 0.34 -0.6
861,985 - MMP_RS04525 0.37 +0.9
861,985 - MMP_RS04525 0.37 +0.2
861,986 + MMP_RS04525 0.37 -1.8
861,986 + MMP_RS04525 0.37 +1.9
861,987 - MMP_RS04525 0.38 +0.2
861,999 + MMP_RS04525 0.39 -2.6
862,145 - MMP_RS04525 0.54 +0.8
862,145 - MMP_RS04525 0.54 -0.4
862,145 - MMP_RS04525 0.54 +0.6
862,146 + MMP_RS04525 0.54 +0.7
862,146 + MMP_RS04525 0.54 +0.4
862,146 + MMP_RS04525 0.54 -0.5
862,152 + MMP_RS04525 0.55 +2.0
862,152 + MMP_RS04525 0.55 -0.1
862,446 + MMP_RS04525 0.85 -1.3
862,446 + MMP_RS04525 0.85 +1.6
862,456 + MMP_RS04525 0.87 -0.8
862,461 - MMP_RS04525 0.87 -0.2
862,461 - MMP_RS04525 0.87 -0.1
862,465 - MMP_RS04525 0.87 -1.2
862,465 - MMP_RS04525 0.87 -1.8
862,465 - MMP_RS04525 0.87 +1.3
862,465 - MMP_RS04525 0.87 +0.4
862,466 + MMP_RS04525 0.88 -0.1
862,466 + MMP_RS04525 0.88 -2.7
862,466 + MMP_RS04525 0.88 -0.1
862,467 - MMP_RS04525 0.88 +2.8
862,467 - MMP_RS04525 0.88 -2.3
862,467 - MMP_RS04525 0.88 +0.4
862,467 - MMP_RS04525 0.88 -0.2
862,468 + MMP_RS04525 0.88 +0.8
862,468 + MMP_RS04525 0.88 +1.1
862,468 + MMP_RS04525 0.88 -1.1
862,470 + MMP_RS04525 0.88 +1.0
862,470 + MMP_RS04525 0.88 +0.2
862,470 + MMP_RS04525 0.88 -0.1
862,470 + MMP_RS04525 0.88 -0.2
862,564 + -0.6
862,566 + +0.1
862,578 - +1.2
862,585 - -0.9
862,589 - +0.2
862,594 + -0.7
862,594 + +0.2
862,667 + -0.8
862,693 - -0.7
862,714 - +0.0
862,714 - -0.8
862,715 + -0.9
862,715 + -0.2
862,718 - -0.4
862,767 - MMP_RS04530 0.12 -1.1
862,771 - MMP_RS04530 0.12 +0.3
862,771 - MMP_RS04530 0.12 -1.7
862,771 - MMP_RS04530 0.12 -0.0
862,883 + MMP_RS04530 0.22 -0.1
862,976 + MMP_RS04530 0.29 +0.3
863,006 + MMP_RS04530 0.32 -2.7
863,263 + MMP_RS04530 0.53 -0.0
863,263 + MMP_RS04530 0.53 +0.6
863,267 - MMP_RS04530 0.54 -0.1
863,309 + MMP_RS04530 0.57 +0.0
863,510 - MMP_RS04530 0.74 +0.9

Or see this region's nucleotide sequence