Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00265

Experiment: McCas_H2_complete sodium nitrite 1.04166666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00255 and MMP_RS00260 are separated by 18 nucleotidesMMP_RS00260 and MMP_RS00265 are separated by 503 nucleotidesMMP_RS00265 and MMP_RS00270 are separated by 72 nucleotides MMP_RS00255: MMP_RS00255 - transcription initiation factor IIB, at 58,605 to 59,624 _RS00255 MMP_RS00260: MMP_RS00260 - Gar1/Naf1 family protein, at 59,643 to 59,924 _RS00260 MMP_RS00265: MMP_RS00265 - type 2 isopentenyl-diphosphate Delta-isomerase, at 60,428 to 61,495 _RS00265 MMP_RS00270: MMP_RS00270 - RNase J family beta-CASP ribonuclease, at 61,568 to 62,914 _RS00270 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 59.744 kb on - strandat 59.755 kb on + strandat 59.760 kb on - strandat 59.765 kb on + strandat 59.787 kb on - strandat 59.787 kb on - strandat 59.787 kb on - strandat 59.794 kb on - strandat 59.820 kb on + strandat 59.825 kb on - strandat 59.825 kb on - strandat 59.880 kb on - strandat 59.901 kb on + strandat 59.908 kb on + strandat 59.950 kb on + strandat 59.995 kb on - strandat 59.995 kb on - strandat 60.013 kb on - strandat 60.020 kb on - strandat 60.042 kb on - strandat 60.056 kb on - strandat 60.099 kb on + strandat 60.099 kb on + strandat 60.102 kb on - strandat 60.102 kb on - strandat 60.102 kb on - strandat 60.124 kb on + strandat 60.229 kb on - strandat 60.265 kb on + strandat 60.277 kb on - strandat 60.302 kb on + strandat 60.312 kb on - strandat 60.315 kb on - strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.331 kb on + strandat 60.381 kb on + strandat 60.401 kb on - strandat 60.402 kb on + strandat 60.411 kb on - strandat 60.411 kb on - strandat 60.411 kb on - strandat 60.412 kb on + strandat 60.412 kb on + strandat 60.415 kb on - strandat 60.416 kb on + strandat 60.416 kb on + strandat 60.452 kb on + strandat 60.470 kb on + strandat 60.700 kb on + strandat 60.917 kb on + strandat 61.531 kb on - strandat 61.591 kb on + strandat 62.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete sodium nitrite 1.04166666666667 mM
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59,744 - -3.0
59,755 + -0.4
59,760 - -1.3
59,765 + -1.8
59,787 - -2.6
59,787 - +2.8
59,787 - -1.8
59,794 - -2.2
59,820 + +1.0
59,825 - -0.2
59,825 - -0.7
59,880 - -2.5
59,901 + -1.7
59,908 + -3.2
59,950 + -1.1
59,995 - +2.0
59,995 - +0.9
60,013 - +2.7
60,020 - +0.8
60,042 - +1.2
60,056 - +0.2
60,099 + +0.2
60,099 + +0.2
60,102 - +1.8
60,102 - +3.7
60,102 - +0.4
60,124 + +1.0
60,229 - +0.2
60,265 + -0.4
60,277 - +0.9
60,302 + +2.8
60,312 - +0.3
60,315 - +1.6
60,316 + +1.4
60,316 + +4.3
60,331 + -0.8
60,381 + -1.9
60,401 - -2.1
60,402 + -0.6
60,411 - -2.4
60,411 - -0.4
60,411 - -2.7
60,412 + -2.5
60,412 + -1.8
60,415 - -3.2
60,416 + -1.8
60,416 + -2.1
60,452 + -2.1
60,470 + -1.5
60,700 + -0.3
60,917 + -2.7
61,531 - -1.4
61,591 + -3.6
62,257 + -0.3

Or see this region's nucleotide sequence