Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00590

Experiment: McCas_H2_complete dimetridazole 0.00833333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00575 and MMP_RS00580 are separated by 157 nucleotidesMMP_RS00580 and MMP_RS00585 are separated by 46 nucleotidesMMP_RS00585 and MMP_RS00590 are separated by 8 nucleotidesMMP_RS00590 and MMP_RS00595 are separated by 16 nucleotidesMMP_RS00595 and MMP_RS00600 are separated by 40 nucleotidesMMP_RS00600 and MMP_RS00605 are separated by 16 nucleotidesMMP_RS00605 and MMP_RS00610 are separated by 33 nucleotidesMMP_RS00610 and MMP_RS00615 are separated by 20 nucleotidesMMP_RS00615 and MMP_RS00620 are separated by 52 nucleotides MMP_RS00575: MMP_RS00575 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 111,821 to 112,720 _RS00575 MMP_RS00580: MMP_RS00580 - tRNA-Thr, at 112,878 to 112,951 _RS00580 MMP_RS00585: MMP_RS00585 - tRNA-Pro, at 112,998 to 113,074 _RS00585 MMP_RS00590: MMP_RS00590 - tRNA-Tyr, at 113,083 to 113,156 _RS00590 MMP_RS00595: MMP_RS00595 - tRNA-Lys, at 113,173 to 113,246 _RS00595 MMP_RS00600: MMP_RS00600 - 5S ribosomal RNA, at 113,287 to 113,401 _RS00600 MMP_RS00605: MMP_RS00605 - tRNA-Asp, at 113,418 to 113,492 _RS00605 MMP_RS00610: MMP_RS00610 - tRNA-Lys, at 113,526 to 113,599 _RS00610 MMP_RS00615: MMP_RS00615 - tRNA-Asp, at 113,620 to 113,694 _RS00615 MMP_RS00620: MMP_RS00620 - 4Fe-4S binding protein, at 113,747 to 114,364 _RS00620 Position (kb) 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 112.635 kb on - strandat 112.669 kb on - strandat 112.734 kb on - strandat 112.734 kb on - strandat 112.751 kb on - strandat 112.752 kb on + strandat 112.777 kb on - strandat 112.798 kb on - strandat 112.798 kb on - strandat 112.799 kb on + strandat 112.799 kb on + strandat 112.809 kb on - strandat 113.770 kb on - strandat 113.806 kb on - strandat 113.886 kb on - strand, within MMP_RS00620at 113.911 kb on + strand, within MMP_RS00620at 113.953 kb on + strand, within MMP_RS00620at 113.986 kb on + strand, within MMP_RS00620at 114.042 kb on - strand, within MMP_RS00620at 114.043 kb on + strand, within MMP_RS00620at 114.055 kb on + strand, within MMP_RS00620at 114.122 kb on + strand, within MMP_RS00620at 114.122 kb on + strand, within MMP_RS00620at 114.142 kb on - strand, within MMP_RS00620

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete dimetridazole 0.00833333333333333 mM
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112,635 - -0.3
112,669 - +0.3
112,734 - -0.3
112,734 - +1.1
112,751 - +0.2
112,752 + +1.7
112,777 - +1.0
112,798 - -0.1
112,798 - +0.3
112,799 + +0.2
112,799 + +0.7
112,809 - +0.1
113,770 - -0.3
113,806 - +4.0
113,886 - MMP_RS00620 0.22 +1.1
113,911 + MMP_RS00620 0.27 +0.4
113,953 + MMP_RS00620 0.33 -0.1
113,986 + MMP_RS00620 0.39 -0.3
114,042 - MMP_RS00620 0.48 -0.9
114,043 + MMP_RS00620 0.48 +0.3
114,055 + MMP_RS00620 0.50 -2.9
114,122 + MMP_RS00620 0.61 +0.0
114,122 + MMP_RS00620 0.61 +1.0
114,142 - MMP_RS00620 0.64 -2.1

Or see this region's nucleotide sequence