Experiment: McCas_H2_complete Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04920 and MMP_RS04925 are separated by 12 nucleotides MMP_RS04925 and MMP_RS04930 are separated by 10 nucleotides
MMP_RS04920: MMP_RS04920 - CCA tRNA nucleotidyltransferase, at 936,440 to 937,774
_RS04920
MMP_RS04925: MMP_RS04925 - DUF530 family protein, at 937,787 to 939,217
_RS04925
MMP_RS04930: MMP_RS04930 - adenosylcobinamide-phosphate synthase CbiB, at 939,228 to 940,148
_RS04930
Position (kb) 937
938
939
940 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 937.116 kb on + strand at 937.209 kb on - strand at 937.311 kb on - strand at 937.370 kb on + strand at 937.383 kb on - strand at 937.423 kb on - strand at 937.556 kb on - strand at 937.557 kb on + strand at 937.662 kb on - strand at 937.666 kb on + strand at 937.702 kb on - strand at 937.702 kb on - strand at 937.703 kb on + strand at 937.704 kb on - strand at 937.715 kb on + strand at 937.718 kb on - strand at 937.723 kb on + strand at 937.749 kb on - strand at 937.753 kb on - strand at 937.885 kb on - strand at 937.980 kb on + strand at 937.983 kb on - strand at 937.984 kb on + strand at 938.106 kb on - strand at 938.193 kb on + strand at 938.484 kb on - strand at 938.485 kb on + strand at 938.485 kb on + strand at 938.561 kb on + strand at 938.561 kb on + strand at 938.631 kb on - strand at 938.632 kb on + strand at 938.701 kb on - strand at 938.768 kb on + strand at 938.809 kb on + strand at 938.816 kb on - strand at 938.817 kb on + strand at 938.819 kb on - strand at 938.913 kb on - strand at 939.018 kb on + strand at 939.026 kb on - strand at 939.026 kb on - strand at 939.042 kb on - strand at 939.123 kb on - strand at 939.130 kb on - strand at 939.139 kb on - strand at 939.164 kb on + strand at 939.311 kb on + strand at 939.406 kb on - strand at 939.413 kb on + strand at 939.461 kb on + strand at 939.579 kb on + strand at 939.692 kb on - strand at 939.721 kb on + strand at 939.814 kb on + strand at 939.846 kb on + strand at 939.892 kb on - strand at 940.128 kb on - strand at 940.129 kb on + strand at 940.131 kb on + strand at 940.135 kb on - strand at 940.146 kb on - strand at 940.147 kb on + strand at 940.185 kb on + strand at 940.214 kb on + strand at 940.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Chloride 250 mM remove 937,116 + -1.9 937,209 - -1.7 937,311 - -2.4 937,370 + -3.0 937,383 - +0.7 937,423 - -1.4 937,556 - -2.0 937,557 + +0.1 937,662 - -0.9 937,666 + -1.0 937,702 - -0.9 937,702 - -2.1 937,703 + -1.6 937,704 - -0.1 937,715 + +0.7 937,718 - -2.5 937,723 + -1.6 937,749 - -1.0 937,753 - +0.2 937,885 - +1.0 937,980 + +0.1 937,983 - -3.5 937,984 + -2.1 938,106 - -4.5 938,193 + -1.0 938,484 - -1.2 938,485 + -1.2 938,485 + -0.9 938,561 + -0.9 938,561 + +0.2 938,631 - -0.3 938,632 + -2.2 938,701 - -3.4 938,768 + -0.9 938,809 + +0.9 938,816 - -2.0 938,817 + -3.6 938,819 - -0.4 938,913 - -3.1 939,018 + -3.9 939,026 - -2.2 939,026 - -3.5 939,042 - -1.9 939,123 - +1.2 939,130 - +0.3 939,139 - -3.1 939,164 + -1.5 939,311 + -2.0 939,406 - -3.0 939,413 + -1.0 939,461 + -3.4 939,579 + -2.5 939,692 - -0.3 939,721 + -2.9 939,814 + -0.5 939,846 + -0.6 939,892 - -2.3 940,128 - +0.0 940,129 + -2.1 940,131 + -1.0 940,135 - -2.0 940,146 - +1.0 940,147 + +0.6 940,185 + +0.4 940,214 + +0.2 940,214 + +1.3
Or see this region's nucleotide sequence