Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00780

Experiment: McCas_H2_complete metronidazole 0.000833333333333333

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS00775 and MMP_RS00780 are separated by 17 nucleotidesMMP_RS00780 and MMP_RS00785 are separated by 56 nucleotides MMP_RS00775: MMP_RS00775 - threonine synthase, at 141,612 to 142,826 _RS00775 MMP_RS00780: MMP_RS00780 - 3-isopropylmalate dehydratase small subunit, at 142,844 to 143,347 _RS00780 MMP_RS00785: MMP_RS00785 - deoxyhypusine synthase, at 143,404 to 144,411 _RS00785 Position (kb) 142 143 144Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 142.197 kb on - strandat 142.346 kb on - strandat 142.920 kb on + strandat 142.928 kb on - strandat 142.928 kb on - strandat 142.930 kb on - strandat 142.931 kb on + strandat 143.080 kb on + strandat 143.430 kb on - strandat 143.606 kb on - strandat 143.624 kb on + strandat 143.668 kb on - strandat 143.825 kb on + strandat 143.839 kb on + strandat 143.842 kb on - strandat 143.842 kb on - strandat 143.843 kb on + strandat 143.843 kb on + strandat 143.843 kb on + strandat 143.846 kb on - strandat 143.847 kb on + strandat 143.860 kb on - strandat 143.860 kb on - strandat 143.860 kb on - strandat 143.861 kb on + strandat 143.861 kb on + strandat 143.868 kb on - strandat 143.915 kb on - strandat 144.007 kb on - strandat 144.007 kb on - strandat 144.016 kb on + strandat 144.016 kb on + strandat 144.064 kb on + strandat 144.131 kb on - strandat 144.253 kb on - strandat 144.253 kb on - strandat 144.254 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete metronidazole 0.000833333333333333
remove
142,197 - -2.8
142,346 - -1.6
142,920 + -0.8
142,928 - -2.7
142,928 - -0.6
142,930 - -1.5
142,931 + -3.4
143,080 + -1.6
143,430 - -4.0
143,606 - -3.0
143,624 + +2.6
143,668 - -4.1
143,825 + -2.9
143,839 + -1.0
143,842 - -2.5
143,842 - -3.6
143,843 + -1.6
143,843 + -1.5
143,843 + -1.1
143,846 - -0.3
143,847 + -2.4
143,860 - -0.2
143,860 - -1.5
143,860 - -1.0
143,861 + -1.5
143,861 + -1.2
143,868 - -3.9
143,915 - -2.2
144,007 - -2.6
144,007 - -1.4
144,016 + -1.8
144,016 + -2.9
144,064 + -4.3
144,131 - -1.6
144,253 - +0.3
144,253 - -2.8
144,254 + -1.4

Or see this region's nucleotide sequence