Strain Fitness in Methanococcus maripaludis S2 around MMP_RS09040

Experiment: McCas_H2_complete perchlorate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03930 and MMP_RS09040 are separated by 278 nucleotidesMMP_RS09040 and MMP_RS03940 are separated by 1 nucleotides MMP_RS03930: MMP_RS03930 - DUF4263 domain-containing protein, at 744,856 to 746,163 _RS03930 MMP_RS09040: MMP_RS09040 - AAA family ATPase, at 746,442 to 748,256 _RS09040 MMP_RS03940: MMP_RS03940 - McrC family protein, at 748,258 to 749,538 _RS03940 Position (kb) 746 747 748 749Strain fitness (log2 ratio) -2 -1 0 1 2at 745.520 kb on + strand, within MMP_RS03930at 745.622 kb on - strand, within MMP_RS03930at 745.669 kb on - strand, within MMP_RS03930at 745.670 kb on + strand, within MMP_RS03930at 745.670 kb on + strand, within MMP_RS03930at 745.721 kb on + strand, within MMP_RS03930at 745.879 kb on - strand, within MMP_RS03930at 745.994 kb on - strand, within MMP_RS03930at 745.994 kb on - strand, within MMP_RS03930at 745.995 kb on + strand, within MMP_RS03930at 745.997 kb on - strand, within MMP_RS03930at 745.997 kb on - strand, within MMP_RS03930at 745.997 kb on - strand, within MMP_RS03930at 745.999 kb on - strand, within MMP_RS03930at 745.999 kb on - strand, within MMP_RS03930at 745.999 kb on - strand, within MMP_RS03930at 746.000 kb on + strand, within MMP_RS03930at 746.028 kb on - strand, within MMP_RS03930at 746.035 kb on - strandat 746.035 kb on - strandat 746.036 kb on + strandat 746.110 kb on - strandat 746.143 kb on - strandat 746.154 kb on - strandat 746.164 kb on + strandat 746.226 kb on - strandat 746.226 kb on - strandat 746.226 kb on - strandat 746.226 kb on - strandat 746.227 kb on + strandat 746.228 kb on - strandat 746.228 kb on - strandat 746.228 kb on - strandat 746.229 kb on + strandat 746.229 kb on + strandat 746.229 kb on + strandat 746.232 kb on - strandat 746.238 kb on + strandat 746.313 kb on + strandat 746.356 kb on - strandat 746.361 kb on + strandat 746.373 kb on + strandat 746.568 kb on - strandat 746.570 kb on - strandat 746.574 kb on + strandat 746.575 kb on - strandat 746.575 kb on - strandat 746.576 kb on + strandat 746.598 kb on - strandat 746.602 kb on - strandat 746.665 kb on + strand, within MMP_RS09040at 746.732 kb on - strand, within MMP_RS09040at 746.733 kb on + strand, within MMP_RS09040at 746.733 kb on + strand, within MMP_RS09040at 746.736 kb on - strand, within MMP_RS09040at 746.742 kb on + strand, within MMP_RS09040at 747.031 kb on - strand, within MMP_RS09040at 747.048 kb on - strand, within MMP_RS09040at 747.049 kb on + strand, within MMP_RS09040at 747.058 kb on - strand, within MMP_RS09040at 747.102 kb on - strand, within MMP_RS09040at 747.108 kb on - strand, within MMP_RS09040at 747.210 kb on + strand, within MMP_RS09040at 747.252 kb on - strand, within MMP_RS09040at 747.341 kb on - strand, within MMP_RS09040at 747.365 kb on + strand, within MMP_RS09040at 747.368 kb on - strand, within MMP_RS09040at 747.383 kb on - strand, within MMP_RS09040at 747.420 kb on - strand, within MMP_RS09040at 747.421 kb on + strand, within MMP_RS09040at 747.422 kb on - strand, within MMP_RS09040at 747.422 kb on - strand, within MMP_RS09040at 747.422 kb on - strand, within MMP_RS09040at 747.423 kb on + strand, within MMP_RS09040at 747.493 kb on + strand, within MMP_RS09040at 747.593 kb on + strand, within MMP_RS09040at 747.641 kb on - strand, within MMP_RS09040at 747.647 kb on + strand, within MMP_RS09040at 747.663 kb on + strand, within MMP_RS09040at 747.692 kb on + strand, within MMP_RS09040at 747.696 kb on + strand, within MMP_RS09040at 747.736 kb on - strand, within MMP_RS09040at 747.809 kb on - strand, within MMP_RS09040at 747.827 kb on + strand, within MMP_RS09040at 747.830 kb on - strand, within MMP_RS09040at 747.830 kb on - strand, within MMP_RS09040at 747.830 kb on - strand, within MMP_RS09040at 747.832 kb on - strand, within MMP_RS09040at 747.852 kb on + strand, within MMP_RS09040at 747.884 kb on - strand, within MMP_RS09040at 747.885 kb on + strand, within MMP_RS09040at 747.885 kb on + strand, within MMP_RS09040at 747.889 kb on - strand, within MMP_RS09040at 747.889 kb on - strand, within MMP_RS09040at 747.889 kb on - strand, within MMP_RS09040at 747.900 kb on - strand, within MMP_RS09040at 747.900 kb on - strand, within MMP_RS09040at 747.901 kb on + strand, within MMP_RS09040at 747.901 kb on + strand, within MMP_RS09040at 747.901 kb on + strand, within MMP_RS09040at 747.971 kb on - strand, within MMP_RS09040at 747.972 kb on + strand, within MMP_RS09040at 747.976 kb on - strand, within MMP_RS09040at 747.976 kb on - strand, within MMP_RS09040at 748.027 kb on + strand, within MMP_RS09040at 748.064 kb on - strand, within MMP_RS09040at 748.082 kb on + strandat 748.212 kb on + strandat 748.215 kb on + strandat 748.219 kb on - strandat 748.219 kb on - strandat 748.219 kb on - strandat 748.220 kb on + strandat 748.221 kb on - strandat 748.221 kb on - strandat 748.222 kb on + strandat 748.223 kb on - strandat 748.223 kb on - strandat 748.223 kb on - strandat 748.224 kb on + strandat 748.269 kb on + strandat 748.297 kb on - strandat 748.304 kb on - strandat 748.351 kb on + strandat 748.426 kb on + strand, within MMP_RS03940at 748.426 kb on + strand, within MMP_RS03940at 748.643 kb on - strand, within MMP_RS03940at 748.665 kb on + strand, within MMP_RS03940at 748.716 kb on - strand, within MMP_RS03940at 748.717 kb on + strand, within MMP_RS03940at 748.773 kb on - strand, within MMP_RS03940at 748.858 kb on + strand, within MMP_RS03940at 748.988 kb on - strand, within MMP_RS03940at 749.102 kb on + strand, within MMP_RS03940at 749.132 kb on - strand, within MMP_RS03940at 749.132 kb on - strand, within MMP_RS03940

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete perchlorate 250 mM
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745,520 + MMP_RS03930 0.51 +0.9
745,622 - MMP_RS03930 0.59 +1.7
745,669 - MMP_RS03930 0.62 -1.5
745,670 + MMP_RS03930 0.62 -1.1
745,670 + MMP_RS03930 0.62 +1.2
745,721 + MMP_RS03930 0.66 +0.2
745,879 - MMP_RS03930 0.78 +1.1
745,994 - MMP_RS03930 0.87 +0.9
745,994 - MMP_RS03930 0.87 +1.0
745,995 + MMP_RS03930 0.87 +0.9
745,997 - MMP_RS03930 0.87 -1.4
745,997 - MMP_RS03930 0.87 +0.8
745,997 - MMP_RS03930 0.87 +1.7
745,999 - MMP_RS03930 0.87 +1.2
745,999 - MMP_RS03930 0.87 +0.2
745,999 - MMP_RS03930 0.87 +1.7
746,000 + MMP_RS03930 0.87 +0.6
746,028 - MMP_RS03930 0.90 +0.5
746,035 - +1.2
746,035 - -0.0
746,036 + +1.5
746,110 - +0.6
746,143 - +1.3
746,154 - -0.3
746,164 + +1.1
746,226 - -1.4
746,226 - +0.9
746,226 - +0.4
746,226 - +0.9
746,227 + +0.3
746,228 - +0.8
746,228 - -0.0
746,228 - +0.9
746,229 + +1.0
746,229 + +1.0
746,229 + +1.6
746,232 - -0.3
746,238 + +0.1
746,313 + +1.3
746,356 - +0.8
746,361 + +1.2
746,373 + -2.0
746,568 - +1.5
746,570 - +1.1
746,574 + +1.0
746,575 - +0.7
746,575 - -0.2
746,576 + +0.9
746,598 - +1.6
746,602 - -1.3
746,665 + MMP_RS09040 0.12 +1.0
746,732 - MMP_RS09040 0.16 +0.1
746,733 + MMP_RS09040 0.16 +0.4
746,733 + MMP_RS09040 0.16 +1.1
746,736 - MMP_RS09040 0.16 +1.2
746,742 + MMP_RS09040 0.17 +0.5
747,031 - MMP_RS09040 0.32 +0.9
747,048 - MMP_RS09040 0.33 +0.6
747,049 + MMP_RS09040 0.33 +1.4
747,058 - MMP_RS09040 0.34 +0.4
747,102 - MMP_RS09040 0.36 -0.7
747,108 - MMP_RS09040 0.37 -0.2
747,210 + MMP_RS09040 0.42 +0.6
747,252 - MMP_RS09040 0.45 +0.1
747,341 - MMP_RS09040 0.50 +0.7
747,365 + MMP_RS09040 0.51 +1.1
747,368 - MMP_RS09040 0.51 +0.2
747,383 - MMP_RS09040 0.52 +1.5
747,420 - MMP_RS09040 0.54 +1.0
747,421 + MMP_RS09040 0.54 +0.4
747,422 - MMP_RS09040 0.54 +0.9
747,422 - MMP_RS09040 0.54 -0.2
747,422 - MMP_RS09040 0.54 -0.7
747,423 + MMP_RS09040 0.54 -1.0
747,493 + MMP_RS09040 0.58 +0.7
747,593 + MMP_RS09040 0.63 +0.7
747,641 - MMP_RS09040 0.66 +2.1
747,647 + MMP_RS09040 0.66 +0.5
747,663 + MMP_RS09040 0.67 +1.4
747,692 + MMP_RS09040 0.69 +0.5
747,696 + MMP_RS09040 0.69 +0.7
747,736 - MMP_RS09040 0.71 +0.3
747,809 - MMP_RS09040 0.75 +1.3
747,827 + MMP_RS09040 0.76 -0.9
747,830 - MMP_RS09040 0.76 -0.5
747,830 - MMP_RS09040 0.76 +0.5
747,830 - MMP_RS09040 0.76 +1.6
747,832 - MMP_RS09040 0.77 +0.3
747,852 + MMP_RS09040 0.78 +1.4
747,884 - MMP_RS09040 0.79 +0.3
747,885 + MMP_RS09040 0.80 -1.2
747,885 + MMP_RS09040 0.80 +1.0
747,889 - MMP_RS09040 0.80 +0.2
747,889 - MMP_RS09040 0.80 -0.3
747,889 - MMP_RS09040 0.80 -0.5
747,900 - MMP_RS09040 0.80 +1.5
747,900 - MMP_RS09040 0.80 +0.7
747,901 + MMP_RS09040 0.80 -0.4
747,901 + MMP_RS09040 0.80 +0.9
747,901 + MMP_RS09040 0.80 +0.2
747,971 - MMP_RS09040 0.84 +0.9
747,972 + MMP_RS09040 0.84 +0.3
747,976 - MMP_RS09040 0.85 -0.7
747,976 - MMP_RS09040 0.85 +0.5
748,027 + MMP_RS09040 0.87 +1.2
748,064 - MMP_RS09040 0.89 +0.1
748,082 + +1.2
748,212 + +1.5
748,215 + +0.7
748,219 - -0.0
748,219 - +0.5
748,219 - +0.6
748,220 + +1.2
748,221 - +0.0
748,221 - -1.9
748,222 + +1.5
748,223 - +1.1
748,223 - +1.4
748,223 - +1.5
748,224 + -0.2
748,269 + +0.4
748,297 - +0.5
748,304 - +1.2
748,351 + +0.7
748,426 + MMP_RS03940 0.13 -0.3
748,426 + MMP_RS03940 0.13 +1.4
748,643 - MMP_RS03940 0.30 +0.3
748,665 + MMP_RS03940 0.32 -0.3
748,716 - MMP_RS03940 0.36 +0.7
748,717 + MMP_RS03940 0.36 +0.6
748,773 - MMP_RS03940 0.40 +0.2
748,858 + MMP_RS03940 0.47 +2.2
748,988 - MMP_RS03940 0.57 +0.6
749,102 + MMP_RS03940 0.66 -1.1
749,132 - MMP_RS03940 0.68 +0.6
749,132 - MMP_RS03940 0.68 +1.1

Or see this region's nucleotide sequence