Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01300

Experiment: McCas_H2_complete perchlorate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01285 and MMP_RS01290 are separated by 33 nucleotidesMMP_RS01290 and MMP_RS01295 overlap by 23 nucleotidesMMP_RS01295 and MMP_RS01300 are separated by 51 nucleotidesMMP_RS01300 and MMP_RS01305 are separated by 1 nucleotidesMMP_RS01305 and MMP_RS01310 overlap by 20 nucleotides MMP_RS01285: MMP_RS01285 - hypothetical protein, at 242,635 to 243,528 _RS01285 MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960 _RS01290 MMP_RS01295: MMP_RS01295 - hypothetical protein, at 243,938 to 244,393 _RS01295 MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930 _RS01300 MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789 _RS01305 MMP_RS01310: MMP_RS01310 - hypothetical protein, at 245,770 to 246,333 _RS01310 Position (kb) 244 245Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 243.532 kb on + strandat 243.558 kb on - strandat 243.629 kb on - strand, within MMP_RS01290at 243.843 kb on - strand, within MMP_RS01290at 243.843 kb on - strand, within MMP_RS01290at 243.844 kb on + strand, within MMP_RS01290at 243.844 kb on + strand, within MMP_RS01290at 243.845 kb on - strand, within MMP_RS01290at 243.845 kb on - strand, within MMP_RS01290at 243.846 kb on + strand, within MMP_RS01290at 243.846 kb on + strand, within MMP_RS01290at 243.849 kb on - strand, within MMP_RS01290at 243.850 kb on + strand, within MMP_RS01290at 243.855 kb on - strand, within MMP_RS01290at 243.870 kb on + strand, within MMP_RS01290at 243.870 kb on + strand, within MMP_RS01290at 243.877 kb on - strand, within MMP_RS01290at 243.878 kb on + strand, within MMP_RS01290at 243.878 kb on + strand, within MMP_RS01290at 243.879 kb on - strand, within MMP_RS01290at 243.879 kb on - strand, within MMP_RS01290at 243.884 kb on + strand, within MMP_RS01290at 243.884 kb on + strand, within MMP_RS01290at 243.999 kb on - strand, within MMP_RS01295at 244.000 kb on + strand, within MMP_RS01295at 244.131 kb on + strand, within MMP_RS01295at 244.185 kb on + strand, within MMP_RS01295at 244.189 kb on - strand, within MMP_RS01295at 244.189 kb on - strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.190 kb on + strand, within MMP_RS01295at 244.191 kb on - strand, within MMP_RS01295at 244.214 kb on + strand, within MMP_RS01295at 244.229 kb on + strand, within MMP_RS01295at 244.288 kb on - strand, within MMP_RS01295at 244.313 kb on + strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.336 kb on - strand, within MMP_RS01295at 244.337 kb on + strand, within MMP_RS01295at 244.337 kb on + strand, within MMP_RS01295at 244.381 kb on - strandat 244.407 kb on + strandat 244.414 kb on + strandat 244.439 kb on - strandat 244.441 kb on - strandat 244.471 kb on - strandat 244.472 kb on + strandat 244.491 kb on - strandat 244.534 kb on + strand, within MMP_RS01300at 244.588 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.606 kb on - strand, within MMP_RS01300at 244.607 kb on + strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.610 kb on - strand, within MMP_RS01300at 244.611 kb on + strand, within MMP_RS01300at 244.611 kb on + strand, within MMP_RS01300at 244.611 kb on + strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.612 kb on - strand, within MMP_RS01300at 244.613 kb on + strand, within MMP_RS01300at 244.613 kb on + strand, within MMP_RS01300at 244.613 kb on + strand, within MMP_RS01300at 244.614 kb on - strand, within MMP_RS01300at 244.614 kb on - strand, within MMP_RS01300at 244.615 kb on + strand, within MMP_RS01300at 244.615 kb on + strand, within MMP_RS01300at 244.623 kb on + strand, within MMP_RS01300at 244.623 kb on + strand, within MMP_RS01300at 244.653 kb on - strand, within MMP_RS01300at 244.653 kb on - strand, within MMP_RS01300at 244.664 kb on + strand, within MMP_RS01300at 244.664 kb on + strand, within MMP_RS01300at 244.667 kb on - strand, within MMP_RS01300at 244.733 kb on + strand, within MMP_RS01300at 244.735 kb on - strand, within MMP_RS01300at 244.735 kb on - strand, within MMP_RS01300at 244.742 kb on + strand, within MMP_RS01300at 244.798 kb on - strand, within MMP_RS01300at 244.798 kb on - strand, within MMP_RS01300at 244.799 kb on + strand, within MMP_RS01300at 244.980 kb on - strandat 245.022 kb on - strand, within MMP_RS01305at 245.133 kb on - strand, within MMP_RS01305at 245.151 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.203 kb on + strand, within MMP_RS01305at 245.203 kb on + strand, within MMP_RS01305at 245.242 kb on - strand, within MMP_RS01305at 245.248 kb on + strand, within MMP_RS01305at 245.253 kb on + strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.267 kb on + strand, within MMP_RS01305at 245.271 kb on - strand, within MMP_RS01305at 245.274 kb on - strand, within MMP_RS01305at 245.293 kb on + strand, within MMP_RS01305at 245.297 kb on - strand, within MMP_RS01305at 245.298 kb on + strand, within MMP_RS01305at 245.298 kb on + strand, within MMP_RS01305at 245.339 kb on - strand, within MMP_RS01305at 245.435 kb on - strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.509 kb on - strand, within MMP_RS01305at 245.560 kb on - strand, within MMP_RS01305at 245.560 kb on - strand, within MMP_RS01305at 245.561 kb on + strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.622 kb on + strand, within MMP_RS01305at 245.625 kb on - strand, within MMP_RS01305at 245.625 kb on - strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.701 kb on - strand, within MMP_RS01305at 245.706 kb on + strandat 245.706 kb on + strandat 245.710 kb on + strandat 245.720 kb on - strandat 245.754 kb on - strandat 245.754 kb on - strandat 245.761 kb on - strandat 245.822 kb on - strandat 245.822 kb on - strandat 245.823 kb on + strandat 245.861 kb on + strand, within MMP_RS01310at 245.893 kb on - strand, within MMP_RS01310at 245.894 kb on + strand, within MMP_RS01310at 245.894 kb on + strand, within MMP_RS01310at 245.901 kb on - strand, within MMP_RS01310at 245.902 kb on + strand, within MMP_RS01310at 245.902 kb on + strand, within MMP_RS01310at 245.905 kb on + strand, within MMP_RS01310at 245.906 kb on - strand, within MMP_RS01310at 245.907 kb on + strand, within MMP_RS01310at 245.929 kb on + strand, within MMP_RS01310

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete perchlorate 250 mM
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243,532 + -1.0
243,558 - -1.0
243,629 - MMP_RS01290 0.17 -1.7
243,843 - MMP_RS01290 0.70 -1.1
243,843 - MMP_RS01290 0.70 -2.5
243,844 + MMP_RS01290 0.71 -0.9
243,844 + MMP_RS01290 0.71 -3.2
243,845 - MMP_RS01290 0.71 -2.4
243,845 - MMP_RS01290 0.71 -0.5
243,846 + MMP_RS01290 0.71 -0.6
243,846 + MMP_RS01290 0.71 -0.1
243,849 - MMP_RS01290 0.72 +0.1
243,850 + MMP_RS01290 0.72 -0.4
243,855 - MMP_RS01290 0.73 -0.7
243,870 + MMP_RS01290 0.77 -1.3
243,870 + MMP_RS01290 0.77 -0.2
243,877 - MMP_RS01290 0.79 -0.3
243,878 + MMP_RS01290 0.79 -2.2
243,878 + MMP_RS01290 0.79 -1.3
243,879 - MMP_RS01290 0.79 -0.5
243,879 - MMP_RS01290 0.79 -0.9
243,884 + MMP_RS01290 0.81 -0.9
243,884 + MMP_RS01290 0.81 -0.6
243,999 - MMP_RS01295 0.13 -5.2
244,000 + MMP_RS01295 0.14 -2.0
244,131 + MMP_RS01295 0.42 -0.5
244,185 + MMP_RS01295 0.54 -0.3
244,189 - MMP_RS01295 0.55 -0.6
244,189 - MMP_RS01295 0.55 -0.2
244,190 + MMP_RS01295 0.55 -0.2
244,190 + MMP_RS01295 0.55 -0.2
244,190 + MMP_RS01295 0.55 +0.0
244,191 - MMP_RS01295 0.55 -0.3
244,214 + MMP_RS01295 0.61 +0.4
244,229 + MMP_RS01295 0.64 -1.8
244,288 - MMP_RS01295 0.77 -1.2
244,313 + MMP_RS01295 0.82 -0.5
244,336 - MMP_RS01295 0.87 -2.4
244,336 - MMP_RS01295 0.87 -0.1
244,336 - MMP_RS01295 0.87 -0.0
244,336 - MMP_RS01295 0.87 -0.8
244,336 - MMP_RS01295 0.87 -0.2
244,337 + MMP_RS01295 0.88 -2.5
244,337 + MMP_RS01295 0.88 -0.3
244,381 - -0.4
244,407 + -0.4
244,414 + -0.1
244,439 - +0.5
244,441 - -0.6
244,471 - +1.3
244,472 + +0.7
244,491 - -1.2
244,534 + MMP_RS01300 0.18 -0.1
244,588 - MMP_RS01300 0.29 +0.0
244,606 - MMP_RS01300 0.33 -2.4
244,606 - MMP_RS01300 0.33 -0.9
244,606 - MMP_RS01300 0.33 +0.1
244,606 - MMP_RS01300 0.33 +0.2
244,606 - MMP_RS01300 0.33 +0.6
244,606 - MMP_RS01300 0.33 -0.0
244,607 + MMP_RS01300 0.33 -0.5
244,610 - MMP_RS01300 0.34 -0.1
244,610 - MMP_RS01300 0.34 +0.8
244,610 - MMP_RS01300 0.34 -1.9
244,610 - MMP_RS01300 0.34 -0.1
244,610 - MMP_RS01300 0.34 +0.2
244,610 - MMP_RS01300 0.34 -0.2
244,610 - MMP_RS01300 0.34 -1.0
244,610 - MMP_RS01300 0.34 -0.6
244,611 + MMP_RS01300 0.34 -0.5
244,611 + MMP_RS01300 0.34 +0.6
244,611 + MMP_RS01300 0.34 +0.2
244,612 - MMP_RS01300 0.34 -0.6
244,612 - MMP_RS01300 0.34 -1.2
244,612 - MMP_RS01300 0.34 -0.8
244,612 - MMP_RS01300 0.34 -3.6
244,612 - MMP_RS01300 0.34 -2.6
244,613 + MMP_RS01300 0.35 -0.4
244,613 + MMP_RS01300 0.35 -0.3
244,613 + MMP_RS01300 0.35 -1.2
244,614 - MMP_RS01300 0.35 -1.6
244,614 - MMP_RS01300 0.35 -2.0
244,615 + MMP_RS01300 0.35 +0.8
244,615 + MMP_RS01300 0.35 -0.2
244,623 + MMP_RS01300 0.37 +0.2
244,623 + MMP_RS01300 0.37 -0.0
244,653 - MMP_RS01300 0.43 -0.8
244,653 - MMP_RS01300 0.43 -0.1
244,664 + MMP_RS01300 0.45 +0.5
244,664 + MMP_RS01300 0.45 -1.8
244,667 - MMP_RS01300 0.46 -0.2
244,733 + MMP_RS01300 0.59 +0.4
244,735 - MMP_RS01300 0.60 -0.4
244,735 - MMP_RS01300 0.60 +0.6
244,742 + MMP_RS01300 0.61 -1.2
244,798 - MMP_RS01300 0.73 -1.6
244,798 - MMP_RS01300 0.73 +0.4
244,799 + MMP_RS01300 0.73 -0.8
244,980 - -0.9
245,022 - MMP_RS01305 0.10 -1.0
245,133 - MMP_RS01305 0.23 +0.6
245,151 - MMP_RS01305 0.26 -0.4
245,154 - MMP_RS01305 0.26 -0.7
245,154 - MMP_RS01305 0.26 -1.3
245,154 - MMP_RS01305 0.26 -0.4
245,155 + MMP_RS01305 0.26 -0.8
245,155 + MMP_RS01305 0.26 +0.3
245,155 + MMP_RS01305 0.26 -0.4
245,155 + MMP_RS01305 0.26 -1.7
245,203 + MMP_RS01305 0.32 -1.0
245,203 + MMP_RS01305 0.32 +0.1
245,242 - MMP_RS01305 0.36 -0.8
245,248 + MMP_RS01305 0.37 +0.0
245,253 + MMP_RS01305 0.37 +0.5
245,266 - MMP_RS01305 0.39 -1.0
245,266 - MMP_RS01305 0.39 -0.2
245,266 - MMP_RS01305 0.39 -1.2
245,266 - MMP_RS01305 0.39 -0.7
245,267 + MMP_RS01305 0.39 -0.4
245,271 - MMP_RS01305 0.40 -0.8
245,274 - MMP_RS01305 0.40 -2.6
245,293 + MMP_RS01305 0.42 -1.3
245,297 - MMP_RS01305 0.43 -1.4
245,298 + MMP_RS01305 0.43 -0.3
245,298 + MMP_RS01305 0.43 -0.6
245,339 - MMP_RS01305 0.47 -0.5
245,435 - MMP_RS01305 0.59 -1.7
245,436 + MMP_RS01305 0.59 +0.1
245,436 + MMP_RS01305 0.59 -0.8
245,436 + MMP_RS01305 0.59 -1.6
245,436 + MMP_RS01305 0.59 -0.3
245,509 - MMP_RS01305 0.67 -1.2
245,560 - MMP_RS01305 0.73 -1.0
245,560 - MMP_RS01305 0.73 -0.5
245,561 + MMP_RS01305 0.73 -1.1
245,621 - MMP_RS01305 0.80 -1.1
245,621 - MMP_RS01305 0.80 -0.5
245,621 - MMP_RS01305 0.80 -1.4
245,621 - MMP_RS01305 0.80 -0.4
245,622 + MMP_RS01305 0.80 -1.4
245,625 - MMP_RS01305 0.81 -0.3
245,625 - MMP_RS01305 0.81 -0.6
245,626 + MMP_RS01305 0.81 -0.3
245,626 + MMP_RS01305 0.81 -0.3
245,626 + MMP_RS01305 0.81 +0.1
245,626 + MMP_RS01305 0.81 +0.1
245,701 - MMP_RS01305 0.90 -0.4
245,706 + -0.3
245,706 + -1.2
245,710 + -0.3
245,720 - -0.8
245,754 - -0.6
245,754 - -0.9
245,761 - -0.2
245,822 - -2.6
245,822 - +0.0
245,823 + -1.8
245,861 + MMP_RS01310 0.16 -0.6
245,893 - MMP_RS01310 0.22 -0.9
245,894 + MMP_RS01310 0.22 -1.6
245,894 + MMP_RS01310 0.22 -1.5
245,901 - MMP_RS01310 0.23 -0.6
245,902 + MMP_RS01310 0.23 -0.5
245,902 + MMP_RS01310 0.23 -0.3
245,905 + MMP_RS01310 0.24 -0.1
245,906 - MMP_RS01310 0.24 +0.0
245,907 + MMP_RS01310 0.24 -0.7
245,929 + MMP_RS01310 0.28 -2.2

Or see this region's nucleotide sequence