Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07660

Experiment: McCas_H2_complete no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07655 and MMP_RS07660 are separated by 91 nucleotidesMMP_RS07660 and MMP_RS07665 are separated by 2 nucleotides MMP_RS07655: MMP_RS07655 - bifunctional NADP phosphatase/NAD kinase, at 1,449,326 to 1,451,026 _RS07655 MMP_RS07660: MMP_RS07660 - L-seryl-tRNA(Sec) kinase, at 1,451,118 to 1,451,885 _RS07660 MMP_RS07665: MMP_RS07665 - amidohydrolase, at 1,451,888 to 1,453,156 _RS07665 Position (kb) 1451 1452Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1450.319 kb on - strandat 1450.372 kb on - strandat 1450.402 kb on + strandat 1451.041 kb on - strandat 1451.042 kb on + strandat 1451.045 kb on - strandat 1451.045 kb on - strandat 1451.045 kb on - strandat 1451.045 kb on - strandat 1451.046 kb on + strandat 1451.046 kb on + strandat 1451.046 kb on + strandat 1451.046 kb on + strandat 1451.049 kb on - strandat 1451.049 kb on - strandat 1451.052 kb on - strandat 1451.052 kb on - strandat 1451.056 kb on - strandat 1451.057 kb on + strandat 1451.333 kb on - strandat 1451.444 kb on + strandat 1451.505 kb on - strandat 1451.690 kb on - strandat 1451.866 kb on - strandat 1451.908 kb on + strandat 1451.999 kb on + strandat 1452.026 kb on - strandat 1452.198 kb on + strandat 1452.443 kb on + strandat 1452.445 kb on - strandat 1452.565 kb on + strandat 1452.817 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete no stress control
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1,450,319 - -1.5
1,450,372 - -2.6
1,450,402 + -3.1
1,451,041 - -0.3
1,451,042 + -1.8
1,451,045 - +1.2
1,451,045 - +1.5
1,451,045 - +2.4
1,451,045 - +1.8
1,451,046 + +1.1
1,451,046 + +1.0
1,451,046 + +1.5
1,451,046 + +1.6
1,451,049 - +0.6
1,451,049 - -0.3
1,451,052 - +1.4
1,451,052 - +0.2
1,451,056 - +2.2
1,451,057 + +0.2
1,451,333 - -4.3
1,451,444 + -1.7
1,451,505 - -0.4
1,451,690 - -2.7
1,451,866 - -1.7
1,451,908 + +0.7
1,451,999 + -1.4
1,452,026 - -0.4
1,452,198 + -0.4
1,452,443 + -1.0
1,452,445 - -3.4
1,452,565 + -0.6
1,452,817 - -3.6

Or see this region's nucleotide sequence