Strain Fitness in Shewanella oneidensis MR-1 around SO0668

Experiment: hydrous ferric oxide electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO0667 and SO0668 overlap by 8 nucleotidesSO0668 and SO0669 are separated by 147 nucleotidesSO0669 and SO0670 are separated by 44 nucleotides SO0667: SO0667 - conserved hypothetical protein (NCBI ptt file), at 685,179 to 686,780 SO0667 SO0668: SO0668 - prophage MuSo1, F protein, putative (NCBI ptt file), at 686,773 to 688,110 SO0668 SO0669: SO0669 - prophage MuSo1, virion morphogenesis protein (NCBI ptt file), at 688,258 to 688,710 SO0669 SO0670: SO0670 - hypothetical protein (NCBI ptt file), at 688,755 to 689,648 SO0670 Position (kb) 686 687 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 685.775 kb on + strand, within SO0667at 685.906 kb on + strand, within SO0667at 685.911 kb on + strand, within SO0667at 685.911 kb on + strand, within SO0667at 685.973 kb on - strand, within SO0667at 686.048 kb on - strand, within SO0667at 686.084 kb on + strand, within SO0667at 686.159 kb on - strand, within SO0667at 686.179 kb on + strand, within SO0667at 686.179 kb on + strand, within SO0667at 686.179 kb on + strand, within SO0667at 686.187 kb on - strand, within SO0667at 686.246 kb on + strand, within SO0667at 686.301 kb on - strand, within SO0667at 686.342 kb on - strand, within SO0667at 686.424 kb on + strand, within SO0667at 686.461 kb on + strand, within SO0667at 686.461 kb on + strand, within SO0667at 686.469 kb on - strand, within SO0667at 686.489 kb on + strand, within SO0667at 686.513 kb on + strand, within SO0667at 686.621 kb on - strandat 686.685 kb on + strandat 686.698 kb on - strandat 686.698 kb on - strandat 686.774 kb on + strandat 686.815 kb on + strandat 686.844 kb on + strandat 686.870 kb on - strandat 686.913 kb on - strand, within SO0668at 686.938 kb on + strand, within SO0668at 686.938 kb on + strand, within SO0668at 686.989 kb on + strand, within SO0668at 687.003 kb on - strand, within SO0668at 687.012 kb on + strand, within SO0668at 687.020 kb on - strand, within SO0668at 687.032 kb on - strand, within SO0668at 687.097 kb on + strand, within SO0668at 687.303 kb on + strand, within SO0668at 687.310 kb on + strand, within SO0668at 687.311 kb on - strand, within SO0668at 687.311 kb on - strand, within SO0668at 687.354 kb on + strand, within SO0668at 687.354 kb on + strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.399 kb on - strand, within SO0668at 687.405 kb on + strand, within SO0668at 687.441 kb on + strand, within SO0668at 687.441 kb on + strand, within SO0668at 687.621 kb on - strand, within SO0668at 687.664 kb on + strand, within SO0668at 687.722 kb on - strand, within SO0668at 687.722 kb on - strand, within SO0668at 687.755 kb on + strand, within SO0668at 687.832 kb on - strand, within SO0668at 687.897 kb on + strand, within SO0668at 687.897 kb on + strand, within SO0668at 687.897 kb on + strand, within SO0668at 687.905 kb on - strand, within SO0668at 687.905 kb on - strand, within SO0668at 687.936 kb on + strand, within SO0668at 687.952 kb on + strand, within SO0668at 687.971 kb on + strand, within SO0668at 687.971 kb on + strand, within SO0668at 687.972 kb on + strand, within SO0668at 687.974 kb on - strand, within SO0668at 687.980 kb on - strandat 687.992 kb on - strandat 688.098 kb on + strandat 688.156 kb on - strandat 688.214 kb on + strandat 688.226 kb on + strandat 688.231 kb on + strandat 688.374 kb on - strand, within SO0669at 688.420 kb on + strand, within SO0669at 688.442 kb on - strand, within SO0669at 688.452 kb on + strand, within SO0669at 688.489 kb on + strand, within SO0669at 688.499 kb on + strand, within SO0669at 688.571 kb on - strand, within SO0669at 688.648 kb on - strand, within SO0669at 688.651 kb on + strand, within SO0669at 688.659 kb on - strand, within SO0669at 688.659 kb on - strand, within SO0669at 688.659 kb on - strand, within SO0669at 688.674 kb on + strandat 688.674 kb on + strandat 688.704 kb on - strandat 688.757 kb on + strandat 688.774 kb on - strandat 688.802 kb on + strandat 688.836 kb on - strandat 688.885 kb on + strand, within SO0670at 688.894 kb on - strand, within SO0670at 688.914 kb on + strand, within SO0670at 688.955 kb on + strand, within SO0670at 688.956 kb on + strand, within SO0670at 688.956 kb on + strand, within SO0670at 688.964 kb on - strand, within SO0670at 688.972 kb on + strand, within SO0670at 688.972 kb on + strand, within SO0670at 688.999 kb on - strand, within SO0670at 689.003 kb on + strand, within SO0670at 689.011 kb on - strand, within SO0670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction hydrous ferric oxide electron acceptor
remove
685,775 + SO0667 0.37 -0.3
685,906 + SO0667 0.45 +2.3
685,911 + SO0667 0.46 -0.2
685,911 + SO0667 0.46 +1.2
685,973 - SO0667 0.50 -1.2
686,048 - SO0667 0.54 +1.2
686,084 + SO0667 0.56 +1.4
686,159 - SO0667 0.61 +0.1
686,179 + SO0667 0.62 -0.8
686,179 + SO0667 0.62 -0.4
686,179 + SO0667 0.62 -0.3
686,187 - SO0667 0.63 +0.5
686,246 + SO0667 0.67 +0.2
686,301 - SO0667 0.70 -0.7
686,342 - SO0667 0.73 +2.0
686,424 + SO0667 0.78 +1.8
686,461 + SO0667 0.80 +1.4
686,461 + SO0667 0.80 +1.1
686,469 - SO0667 0.81 +0.4
686,489 + SO0667 0.82 +1.3
686,513 + SO0667 0.83 +0.0
686,621 - +0.8
686,685 + +0.4
686,698 - +2.1
686,698 - -1.0
686,774 + +1.3
686,815 + -1.2
686,844 + -1.2
686,870 - -0.7
686,913 - SO0668 0.10 -0.7
686,938 + SO0668 0.12 -0.4
686,938 + SO0668 0.12 -0.8
686,989 + SO0668 0.16 +1.0
687,003 - SO0668 0.17 +0.5
687,012 + SO0668 0.18 +1.5
687,020 - SO0668 0.18 +1.9
687,032 - SO0668 0.19 +0.6
687,097 + SO0668 0.24 +0.7
687,303 + SO0668 0.40 -0.8
687,310 + SO0668 0.40 -0.3
687,311 - SO0668 0.40 +0.2
687,311 - SO0668 0.40 +1.5
687,354 + SO0668 0.43 -0.1
687,354 + SO0668 0.43 +1.9
687,362 - SO0668 0.44 +0.4
687,362 - SO0668 0.44 +2.0
687,362 - SO0668 0.44 +1.0
687,362 - SO0668 0.44 +0.2
687,399 - SO0668 0.47 -1.0
687,405 + SO0668 0.47 -1.5
687,441 + SO0668 0.50 +0.1
687,441 + SO0668 0.50 +1.3
687,621 - SO0668 0.63 +0.1
687,664 + SO0668 0.67 -2.5
687,722 - SO0668 0.71 +1.3
687,722 - SO0668 0.71 +1.6
687,755 + SO0668 0.73 +0.5
687,832 - SO0668 0.79 +0.3
687,897 + SO0668 0.84 -0.8
687,897 + SO0668 0.84 +0.8
687,897 + SO0668 0.84 +0.9
687,905 - SO0668 0.85 +0.1
687,905 - SO0668 0.85 -0.4
687,936 + SO0668 0.87 +0.2
687,952 + SO0668 0.88 +0.8
687,971 + SO0668 0.90 +2.9
687,971 + SO0668 0.90 -2.0
687,972 + SO0668 0.90 -0.7
687,974 - SO0668 0.90 +1.6
687,980 - +0.5
687,992 - -1.6
688,098 + -0.8
688,156 - -3.7
688,214 + -1.8
688,226 + -1.3
688,231 + -0.8
688,374 - SO0669 0.26 +1.2
688,420 + SO0669 0.36 +1.4
688,442 - SO0669 0.41 +2.5
688,452 + SO0669 0.43 +1.4
688,489 + SO0669 0.51 -2.4
688,499 + SO0669 0.53 +1.2
688,571 - SO0669 0.69 +0.1
688,648 - SO0669 0.86 +1.4
688,651 + SO0669 0.87 +1.1
688,659 - SO0669 0.89 -0.5
688,659 - SO0669 0.89 -2.0
688,659 - SO0669 0.89 +0.4
688,674 + -1.3
688,674 + -2.7
688,704 - +1.8
688,757 + +0.7
688,774 - +0.6
688,802 + +0.3
688,836 - -0.1
688,885 + SO0670 0.15 +1.8
688,894 - SO0670 0.16 -0.2
688,914 + SO0670 0.18 +0.3
688,955 + SO0670 0.22 +0.4
688,956 + SO0670 0.22 -2.3
688,956 + SO0670 0.22 -2.7
688,964 - SO0670 0.23 -2.7
688,972 + SO0670 0.24 +0.7
688,972 + SO0670 0.24 -2.5
688,999 - SO0670 0.27 -0.9
689,003 + SO0670 0.28 -0.5
689,011 - SO0670 0.29 -0.4

Or see this region's nucleotide sequence