Experiment: hydrous ferric oxide electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nosF and nosY are separated by 53 nucleotides nosY and SO0490 are separated by 213 nucleotides
SO0487: nosF - copper ABC transporter, ATP-binding protein (NCBI ptt file), at 510,632 to 511,630
nosF
SO0488: nosY - copper ABC transporter, permease protein (NCBI ptt file), at 511,684 to 512,523
nosY
SO0490: SO0490 - transcriptional regulator (NCBI ptt file), at 512,737 to 514,020
SO0490
Position (kb) 511
512
513 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 510.791 kb on - strand, within nosF at 510.849 kb on + strand, within nosF at 510.972 kb on - strand, within nosF at 510.980 kb on - strand, within nosF at 511.030 kb on + strand, within nosF at 511.038 kb on - strand, within nosF at 511.070 kb on + strand, within nosF at 511.078 kb on - strand, within nosF at 511.109 kb on - strand, within nosF at 511.137 kb on + strand, within nosF at 511.145 kb on - strand, within nosF at 511.190 kb on + strand, within nosF at 511.198 kb on - strand, within nosF at 511.198 kb on - strand, within nosF at 511.274 kb on + strand, within nosF at 511.303 kb on - strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.412 kb on + strand, within nosF at 511.418 kb on + strand, within nosF at 511.418 kb on + strand, within nosF at 511.418 kb on + strand, within nosF at 511.426 kb on - strand, within nosF at 511.434 kb on + strand, within nosF at 511.434 kb on + strand, within nosF at 511.434 kb on + strand, within nosF at 511.434 kb on + strand, within nosF at 511.442 kb on - strand, within nosF at 511.442 kb on - strand, within nosF at 511.554 kb on + strand at 511.581 kb on - strand at 511.586 kb on + strand at 511.586 kb on + strand at 511.638 kb on - strand at 511.698 kb on + strand at 511.706 kb on - strand at 511.785 kb on - strand, within nosY at 511.808 kb on + strand, within nosY at 511.808 kb on + strand, within nosY at 511.808 kb on + strand, within nosY at 511.808 kb on + strand, within nosY at 511.816 kb on - strand, within nosY at 511.816 kb on - strand, within nosY at 511.823 kb on + strand, within nosY at 511.831 kb on - strand, within nosY at 511.831 kb on - strand, within nosY at 511.839 kb on - strand, within nosY at 512.095 kb on + strand, within nosY at 512.122 kb on + strand, within nosY at 512.148 kb on + strand, within nosY at 512.150 kb on + strand, within nosY at 512.191 kb on - strand, within nosY at 512.210 kb on + strand, within nosY at 512.218 kb on + strand, within nosY at 512.242 kb on - strand, within nosY at 512.365 kb on - strand, within nosY at 512.413 kb on - strand, within nosY at 512.428 kb on + strand, within nosY at 512.448 kb on - strand at 512.448 kb on - strand at 512.815 kb on + strand at 512.815 kb on + strand at 512.823 kb on - strand at 512.914 kb on - strand, within SO0490 at 512.941 kb on - strand, within SO0490 at 512.991 kb on + strand, within SO0490 at 513.029 kb on + strand, within SO0490 at 513.029 kb on + strand, within SO0490 at 513.037 kb on - strand, within SO0490 at 513.105 kb on + strand, within SO0490 at 513.145 kb on + strand, within SO0490 at 513.162 kb on + strand, within SO0490 at 513.182 kb on - strand, within SO0490 at 513.252 kb on - strand, within SO0490 at 513.286 kb on + strand, within SO0490 at 513.288 kb on + strand, within SO0490 at 513.294 kb on - strand, within SO0490 at 513.379 kb on + strand, within SO0490 at 513.431 kb on - strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.478 kb on + strand, within SO0490 at 513.486 kb on - strand, within SO0490 at 513.486 kb on - strand, within SO0490 at 513.486 kb on - strand, within SO0490 at 513.486 kb on - strand, within SO0490 at 513.486 kb on - strand, within SO0490 at 513.487 kb on - strand, within SO0490
Per-strain Table
Position Strand Gene LocusTag Fraction hydrous ferric oxide electron acceptor remove 510,791 - nosF SO0487 0.16 -0.9 510,849 + nosF SO0487 0.22 -0.1 510,972 - nosF SO0487 0.34 +1.0 510,980 - nosF SO0487 0.35 +0.9 511,030 + nosF SO0487 0.40 +1.4 511,038 - nosF SO0487 0.41 -1.3 511,070 + nosF SO0487 0.44 -0.2 511,078 - nosF SO0487 0.45 -0.2 511,109 - nosF SO0487 0.48 -1.9 511,137 + nosF SO0487 0.51 +2.1 511,145 - nosF SO0487 0.51 +0.4 511,190 + nosF SO0487 0.56 +0.0 511,198 - nosF SO0487 0.57 +1.0 511,198 - nosF SO0487 0.57 -0.2 511,274 + nosF SO0487 0.64 +2.4 511,303 - nosF SO0487 0.67 +1.3 511,305 + nosF SO0487 0.67 +0.8 511,305 + nosF SO0487 0.67 -0.3 511,305 + nosF SO0487 0.67 -0.9 511,305 + nosF SO0487 0.67 -0.4 511,305 + nosF SO0487 0.67 -1.6 511,305 + nosF SO0487 0.67 -0.9 511,305 + nosF SO0487 0.67 -1.9 511,305 + nosF SO0487 0.67 +0.2 511,305 + nosF SO0487 0.67 -1.4 511,305 + nosF SO0487 0.67 +1.4 511,305 + nosF SO0487 0.67 +1.0 511,305 + nosF SO0487 0.67 +1.4 511,305 + nosF SO0487 0.67 -2.2 511,305 + nosF SO0487 0.67 +4.4 511,305 + nosF SO0487 0.67 +0.0 511,305 + nosF SO0487 0.67 -4.0 511,305 + nosF SO0487 0.67 +2.2 511,305 + nosF SO0487 0.67 -0.3 511,305 + nosF SO0487 0.67 -1.5 511,305 + nosF SO0487 0.67 +1.4 511,305 + nosF SO0487 0.67 +1.3 511,305 + nosF SO0487 0.67 +0.1 511,305 + nosF SO0487 0.67 +0.5 511,305 + nosF SO0487 0.67 -1.0 511,305 + nosF SO0487 0.67 +0.4 511,305 + nosF SO0487 0.67 -1.8 511,313 - nosF SO0487 0.68 +1.1 511,313 - nosF SO0487 0.68 +0.9 511,313 - nosF SO0487 0.68 +1.6 511,313 - nosF SO0487 0.68 -1.0 511,313 - nosF SO0487 0.68 -2.9 511,313 - nosF SO0487 0.68 -0.7 511,313 - nosF SO0487 0.68 -0.8 511,313 - nosF SO0487 0.68 -0.5 511,313 - nosF SO0487 0.68 -1.1 511,313 - nosF SO0487 0.68 -1.1 511,313 - nosF SO0487 0.68 +1.2 511,313 - nosF SO0487 0.68 -1.7 511,313 - nosF SO0487 0.68 +0.3 511,313 - nosF SO0487 0.68 -1.5 511,313 - nosF SO0487 0.68 -2.6 511,313 - nosF SO0487 0.68 +1.6 511,313 - nosF SO0487 0.68 +1.2 511,313 - nosF SO0487 0.68 -0.2 511,313 - nosF SO0487 0.68 +0.7 511,313 - nosF SO0487 0.68 -0.9 511,313 - nosF SO0487 0.68 +0.9 511,313 - nosF SO0487 0.68 -2.2 511,313 - nosF SO0487 0.68 -0.3 511,313 - nosF SO0487 0.68 +0.5 511,313 - nosF SO0487 0.68 -0.8 511,313 - nosF SO0487 0.68 +1.0 511,412 + nosF SO0487 0.78 +0.0 511,418 + nosF SO0487 0.79 +1.0 511,418 + nosF SO0487 0.79 -0.4 511,418 + nosF SO0487 0.79 +0.5 511,426 - nosF SO0487 0.79 +2.5 511,434 + nosF SO0487 0.80 -0.3 511,434 + nosF SO0487 0.80 +0.2 511,434 + nosF SO0487 0.80 +2.6 511,434 + nosF SO0487 0.80 -1.3 511,442 - nosF SO0487 0.81 +1.5 511,442 - nosF SO0487 0.81 -0.9 511,554 + +1.5 511,581 - +0.3 511,586 + +0.4 511,586 + -0.5 511,638 - +1.1 511,698 + +0.6 511,706 - +0.1 511,785 - nosY SO0488 0.12 +0.6 511,808 + nosY SO0488 0.15 +0.9 511,808 + nosY SO0488 0.15 -0.7 511,808 + nosY SO0488 0.15 -1.2 511,808 + nosY SO0488 0.15 +0.2 511,816 - nosY SO0488 0.16 +0.2 511,816 - nosY SO0488 0.16 -0.8 511,823 + nosY SO0488 0.17 -1.3 511,831 - nosY SO0488 0.17 -1.2 511,831 - nosY SO0488 0.17 +0.5 511,839 - nosY SO0488 0.18 -1.0 512,095 + nosY SO0488 0.49 -0.4 512,122 + nosY SO0488 0.52 -0.1 512,148 + nosY SO0488 0.55 -0.4 512,150 + nosY SO0488 0.55 -2.8 512,191 - nosY SO0488 0.60 -2.0 512,210 + nosY SO0488 0.63 -0.3 512,218 + nosY SO0488 0.64 +0.2 512,242 - nosY SO0488 0.66 +0.8 512,365 - nosY SO0488 0.81 -0.2 512,413 - nosY SO0488 0.87 +0.1 512,428 + nosY SO0488 0.89 -1.7 512,448 - -0.3 512,448 - -0.8 512,815 + -3.4 512,815 + +0.1 512,823 - +0.4 512,914 - SO0490 0.14 +1.5 512,941 - SO0490 0.16 +0.9 512,991 + SO0490 0.20 +0.1 513,029 + SO0490 0.23 +0.9 513,029 + SO0490 0.23 +0.1 513,037 - SO0490 0.23 +0.7 513,105 + SO0490 0.29 -0.0 513,145 + SO0490 0.32 -2.6 513,162 + SO0490 0.33 +1.1 513,182 - SO0490 0.35 -1.6 513,252 - SO0490 0.40 -3.1 513,286 + SO0490 0.43 +0.5 513,288 + SO0490 0.43 +1.6 513,294 - SO0490 0.43 -1.0 513,379 + SO0490 0.50 +0.5 513,431 - SO0490 0.54 -1.1 513,478 + SO0490 0.58 -1.5 513,478 + SO0490 0.58 -0.3 513,478 + SO0490 0.58 -0.8 513,478 + SO0490 0.58 -0.1 513,478 + SO0490 0.58 -4.0 513,478 + SO0490 0.58 -0.7 513,478 + SO0490 0.58 +0.3 513,478 + SO0490 0.58 +0.7 513,478 + SO0490 0.58 -1.1 513,478 + SO0490 0.58 -0.1 513,486 - SO0490 0.58 -0.1 513,486 - SO0490 0.58 -0.6 513,486 - SO0490 0.58 +0.7 513,486 - SO0490 0.58 -0.2 513,486 - SO0490 0.58 +0.1 513,487 - SO0490 0.58 -0.3
Or see this region's nucleotide sequence